Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 2.5e-98 362.1 177 100.0
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 4.7e-97 357.8 177 97.7
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 3.1e-93 345.1 177 94.9
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 9.1e-93 343.6 177 93.2
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 2.2e-91 339.0 177 92.1
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 2.9e-91 338.6 177 92.1
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 9.4e-90 333.6 177 90.4
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 3.6e-89 331.6 177 89.8
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 2.7e-84 315.5 178 85.4
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 7.7e-84 313.9 177 85.9
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.0e-83 313.5 177 85.3
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.3e-83 313.2 177 85.3
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.3e-83 313.2 177 84.7
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 2.9e-83 312.0 177 85.9
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 3.8e-83 311.6 177 86.4
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 8.6e-83 310.5 177 84.2
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 8.6e-83 310.5 177 84.2
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 8.6e-83 310.5 177 84.2
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 8.6e-83 310.5 177 85.9
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.5e-82 309.7 176 85.8
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.9e-82 309.3 177 83.6
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 1.9e-82 309.3 177 85.3
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.9e-82 309.3 177 84.2
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 3.3e-82 308.5 177 85.3
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 5.5e-82 307.8 177 85.9
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 7.2e-82 307.4 177 84.7
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 9.5e-82 307.0 177 87.6
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 2.1e-81 305.8 177 85.3
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 2.8e-81 305.4 177 84.2
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 4.7e-81 304.7 177 85.3
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 8.0e-81 303.9 177 83.1
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 8.0e-81 303.9 177 83.6
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.0e-80 303.5 177 81.9
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.4e-80 303.1 177 81.4
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.4e-80 303.1 177 87.0
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.4e-80 303.1 177 83.6
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 1.8e-80 302.8 170 84.1
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 4.0e-80 301.6 175 82.3
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 4.0e-80 301.6 177 83.1
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 5.2e-80 301.2 177 80.8
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 6.8e-80 300.8 182 82.4
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.2e-79 300.1 177 85.3
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.2e-79 300.1 177 85.3
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 1.2e-79 300.1 177 79.7
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 1.5e-79 299.7 177 80.8
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 1.5e-79 299.7 177 82.5
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 1.5e-79 299.7 175 80.6
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 2.0e-79 299.3 168 86.3
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 2.0e-79 299.3 177 82.5
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 2.0e-79 299.3 179 81.0
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 2.6e-79 298.9 177 82.5
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.6e-79 298.9 177 84.7
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 2.6e-79 298.9 179 80.4
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 3.4e-79 298.5 178 82.6
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 4.4e-79 298.1 177 81.9
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 9.8e-79 297.0 177 84.7
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.3e-78 296.6 177 79.7
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 1.3e-78 296.6 167 85.0
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.7e-78 296.2 177 81.9
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.8e-78 295.4 177 80.2
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 3.7e-78 295.0 177 80.8
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 4.9e-78 294.7 177 79.7
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 4.9e-78 294.7 178 80.3
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 8.3e-78 293.9 177 81.4
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 8.3e-78 293.9 177 82.5
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.1e-77 293.5 177 83.6
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.8e-77 292.7 177 80.2
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 2.4e-77 292.4 177 80.2
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 3.2e-77 292.0 177 80.8
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 7.0e-77 290.8 175 78.9
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.0e-77 290.8 175 78.9
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.0e-77 290.8 175 78.9
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 1.2e-76 290.0 170 82.9
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.2e-76 290.0 175 78.9
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.2e-76 290.0 167 83.8
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 1.6e-76 289.7 177 80.2
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 2.7e-76 288.9 168 82.7
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 3.5e-76 288.5 170 82.4
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 3.5e-76 288.5 170 82.4
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 3.5e-76 288.5 170 82.4
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 4.5e-76 288.1 170 80.0
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 4.5e-76 288.1 177 79.7
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.9e-76 287.7 172 84.3
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 5.9e-76 287.7 169 84.6
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 7.8e-76 287.3 170 81.8
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.7e-75 286.2 175 79.4
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.9e-75 285.0 161 85.1
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 5.0e-75 284.6 173 79.2
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 6.6e-75 284.3 179 77.1
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 6.6e-75 284.3 164 82.3
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 6.6e-75 284.3 177 78.0
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 8.6e-75 283.9 168 83.3
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.1e-74 283.5 170 81.2
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 1.5e-74 283.1 166 81.3
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.5e-74 283.1 181 79.0
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 1.5e-74 283.1 167 82.6
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 2.5e-74 282.3 175 78.9
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 2.5e-74 282.3 177 80.8
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.3e-74 282.0 178 80.3
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 7.3e-74 280.8 167 79.0
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 7.3e-74 280.8 175 77.1
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.2e-73 280.0 166 78.9
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.2e-73 280.0 229 67.2
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.6e-73 279.6 175 76.6
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.6e-73 279.6 171 77.2
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 2.1e-73 279.3 166 80.1
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 2.1e-73 279.3 165 83.0
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 2.1e-73 279.3 177 79.1
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.1e-73 279.3 168 78.0
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 2.1e-73 279.3 175 76.6
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 4.7e-73 278.1 165 82.4
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 4.7e-73 278.1 171 77.8
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 8.0e-73 277.3 177 75.7
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 8.0e-73 277.3 168 78.0
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 1.4e-72 276.6 169 78.1
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.0e-72 275.0 167 77.8
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.2e-71 273.5 167 77.2
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 1.2e-71 273.5 177 74.6
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.2e-71 273.5 173 75.1
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 9.8e-71 270.4 173 74.0
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 3.7e-70 268.5 155 83.2
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 8.3e-70 267.3 178 71.3
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 3.2e-69 265.4 177 72.3
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 1.6e-68 263.1 171 77.2
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.5e-68 261.9 156 79.5
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 4.6e-68 261.5 157 79.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.7e-67 259.6 166 76.5
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.9e-66 256.1 159 78.0
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 1.6e-65 253.1 178 68.5
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 4.7e-65 251.5 175 67.4
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 8.0e-65 250.8 168 70.8
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.4e-64 250.0 175 70.3
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.9e-62 242.3 174 66.1
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 1.0e-59 233.8 124 90.3
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.4e-56 223.4 168 64.3
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 4.0e-56 221.9 169 63.9
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 5.8e-55 218.0 124 84.7
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 5.8e-55 218.0 124 84.7
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.1e-53 213.8 139 75.5
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 9.2e-53 210.7 124 82.3
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 2.3e-51 206.1 124 80.6
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 1.4e-48 196.8 191 53.4
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 2.0e-47 193.0 115 82.6
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 6.4e-46 188.0 117 81.2
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 2.8e-41 172.6 176 50.0
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.2e-38 162.9 99 79.8
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 2.2e-38 162.9 86 84.9
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.4e-37 159.5 103 75.7
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.1e-37 157.9 106 72.6
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 2.8e-33 146.0 95 74.7
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 1.6e-25 120.2 109 56.9
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 4.0e-24 115.5 60 85.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.2e-23 114.0 185 35.7
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 5.5e-21 105.1 162 38.9
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.1e-20 103.2 118 51.7
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.0e-19 99.4 121 44.6
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.9e-19 99.0 143 39.9
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 8.7e-19 97.8 54 85.2
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-18 97.4 97 50.5
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 8.2e-17 91.3 52 84.6
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.1e-16 90.9 48 87.5
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.0e-14 84.3 50 82.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 3.2e-13 79.3 63 65.1
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 5.9e-07 58.5 35 74.3


User provided reference genes

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