Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G232300 Glycine max HOM05D000786 ORTHO05D000779 1.5e-62 242.7 118 100.0
Glyma.19G229300 Glycine max HOM05D000786 ORTHO05D000779 5.0e-47 191.0 118 85.6
VMungo1383G3574 Vigna mungo HOM05D059857 ORTHO05D000779 7.3e-22 107.5 119 53.8
Lj1g0008547 Lotus japonicus HOM05D000786 ORTHO05D000779 6.9e-20 100.9 111 52.3
Medtr7g112020 Medicago truncatula HOM05D000786 ORTHO05D000779 5.4e-17 91.3 129 43.4
TPR.G1606 Trifolium pratense HOM05D000786 ORTHO05D000779 5.4e-17 91.3 119 50.4
arahy.Tifrunner.gnm1.ann1.JFXL2D Arachis hypogaea HOM05D000786 ORTHO05D000779 7.1e-17 90.9 106 51.9
Lalb_Chr15g0077641 Lupinus albus HOM05D000786 ORTHO05D000779 2.5e-14 82.4 102 48.0
Lalb_Chr18g0046031 Lupinus albus HOM05D000786 ORTHO05D000779 5.6e-14 81.3 56 69.6
MELO3C025388.2 Cucumis melo HOM05D000786 ORTHO05D000779 4.0e-12 75.1 118 38.1
FAN09G3870 Fragaria x ananassa HOM05D013158 ORTHO05D000779 5.3e-12 74.7 132 40.2
Cfa006682 Carpinus fangiana HOM05D000786 ORTHO05D000779 1.5e-11 73.2 118 41.5
RcHm_v2.0_Chr3g0456821 Rosa chinensis HOM05D013158 ORTHO05D000779 7.6e-11 70.9 142 35.9
CiPaw.08G156800 Carya illinoinensis HOM05D000786 ORTHO05D000779 9.9e-11 70.5 66 60.6
Prupe.6G315400 Prunus persica HOM05D000786 ORTHO05D000779 9.9e-11 70.5 108 40.7
Cpa.g.sc48.139 Carica papaya HOM05D000786 ORTHO05D000779 1.3e-10 70.1 55 58.2
PGR083G1617 Punica granatum HOM05D000786 ORTHO05D000779 1.3e-10 70.1 96 42.7
CiPaw.07G027400 Carya illinoinensis HOM05D000786 ORTHO05D000779 1.7e-10 69.7 55 65.5
Phvul.001G225900 Phaseolus vulgaris HOM05D059857 ORTHO05D000779 2.2e-10 69.3 118 43.2
Haze_04084 Corylus avellana HOM05D000786 ORTHO05D000779 2.9e-10 68.9 118 41.5
FAN14G2240 Fragaria x ananassa HOM05D013158 ORTHO05D000779 3.8e-10 68.6 127 38.6
Ciclev10003628m.g Citrus clementina HOM05D000786 ORTHO05D000779 1.1e-09 67.0 47 61.7
THA.LOC104818741 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 1.1e-09 67.0 47 61.7
Atru.chr2.141 Acer truncatum HOM05D000786 ORTHO05D000779 1.4e-09 66.6 54 59.3
ClCG03G017660 Citrullus lanatus HOM05D032089 ORTHO05D000779 1.9e-09 66.2 83 43.4
CsaV3_3G005210 Cucumis sativus L. HOM05D000786 ORTHO05D000779 1.9e-09 66.2 120 34.2
MD12G1207900 Malus domestica HOM05D000786 ORTHO05D000779 2.4e-09 65.9 133 37.6
TAR365G1099 Trochodendron aralioides HOM05D000786 ORTHO05D000779 2.4e-09 65.9 57 57.9
TAR636G3362 Trochodendron aralioides HOM05D000786 ORTHO05D000779 4.2e-09 65.1 45 66.7
BcaC09g47844 Brassica carinata HOM05D000786 ORTHO05D000779 5.5e-09 64.7 47 59.6
BolC1t05676H Brassica oleracea HOM05D000786 ORTHO05D000779 5.5e-09 64.7 47 59.6
BraA01t04489Z Brassica rapa HOM05D000786 ORTHO05D000779 5.5e-09 64.7 47 59.6
MBI18_g24950_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 9.3e-09 63.9 76 44.7
TAR362G0003 Trochodendron aralioides HOM05D000786 ORTHO05D000779 9.3e-09 63.9 87 44.8
CARHR080180 Cardamine hirsuta HOM05D000786 ORTHO05D000779 1.2e-08 63.5 47 59.6
Carub.0003s0508 Capsella rubella HOM05D000786 ORTHO05D000779 1.6e-08 63.2 47 57.4
Nn3g21623 Nelumbo nucifera HOM05D000786 ORTHO05D000779 1.6e-08 63.2 46 65.2
Thhalv10021773m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 2.1e-08 62.8 47 55.3
BcaC05g29785 Brassica carinata HOM05D000786 ORTHO05D000779 2.7e-08 62.4 47 57.4
Lj5g0017815 Lotus japonicus HOM05D013158 ORTHO05D000779 2.7e-08 62.4 117 37.6
MSTRG.21668 Avicennia marina HOM05D000786 ORTHO05D000779 3.5e-08 62.0 89 37.1
ClCG10G005480 Citrullus lanatus HOM05D000786 ORTHO05D000779 3.5e-08 62.0 118 33.9
CsaV3_1G040610 Cucumis sativus L. HOM05D000786 ORTHO05D000779 3.5e-08 62.0 79 41.8
TPR.G2615 Trifolium pratense HOM05D005361 ORTHO05D006518 3.5e-08 62.0 119 35.3
AT3G05725 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 4.6e-08 61.6 47 55.3
MELO3C015491.2 Cucumis melo HOM05D000786 ORTHO05D000779 4.6e-08 61.6 79 41.8
MD04G1195600 Malus domestica HOM05D000786 ORTHO05D000779 4.6e-08 61.6 55 54.5
Sp3g04610 Schrenkiella parvula HOM05D000786 ORTHO05D000779 4.6e-08 61.6 47 55.3
Rhsim13G0006500 Rhododendron simsii HOM05D000786 ORTHO05D000779 6.0e-08 61.2 111 36.9
SGA_v2.0_scaffold376G50264 Striga asiatica HOM05D000786 ORTHO05D000779 6.0e-08 61.2 91 38.5
TWI12G0435 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 6.0e-08 61.2 92 40.2
Glyma.15G026000 Glycine max HOM05D000786 ORTHO05D000779 7.9e-08 60.8 67 46.3
vmacro02416 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 7.9e-08 60.8 61 50.8
C05p61500 Brassica napus HOM05D000786 ORTHO05D000779 1.0e-07 60.5 47 53.2
BraA05t22947Z Brassica rapa HOM05D000786 ORTHO05D000779 1.0e-07 60.5 47 53.2
Sopen09g030450 Solanum pennellii HOM05D000786 ORTHO05D000779 1.0e-07 60.5 64 45.3
Aa31LG5G16150 Aethionema arabicum HOM05D000786 ORTHO05D000779 1.8e-07 59.7 47 51.1
SHI00507 Sapria himalayana HOM05D000786 ORTHO05D000779 1.8e-07 59.7 50 54.0
Cpa.g.sc18.2 Carica papaya HOM05D000786 ORTHO05D000779 2.3e-07 59.3 81 39.5
DCAR_002871 Daucus carota HOM05D000786 ORTHO05D000779 2.3e-07 59.3 56 48.2
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 2.3e-07 59.3 97 37.1
Manes.09G175200 Manihot esculenta HOM05D000786 ORTHO05D000779 3.0e-07 58.9 47 57.4
Potri.005G019900 Populus trichocarpa HOM05D000786 ORTHO05D000779 3.0e-07 58.9 45 60.0
Potri.006G147700 Populus trichocarpa HOM05D000786 ORTHO05D000779 3.0e-07 58.9 46 56.5
CAN.G668.24 Capsicum annuum HOM05D000786 ORTHO05D000779 3.9e-07 58.5 64 45.3
Migut.N02109 Erythranthe guttata HOM05D000786 ORTHO05D000779 3.9e-07 58.5 43 60.5
Medtr1g083830 Medicago truncatula HOM05D013158 ORTHO05D000779 3.9e-07 58.5 111 37.8
Thecc.05G320600 Theobroma cacao HOM05D000786 ORTHO05D000779 3.9e-07 58.5 43 65.1
BcaB02g08768 Brassica carinata HOM05D000786 ORTHO05D000779 5.1e-07 58.2 75 44.0
A05p00450 Brassica napus HOM05D000786 ORTHO05D000779 5.1e-07 58.2 78 43.6
BraA05t19043Z Brassica rapa HOM05D000786 ORTHO05D000779 5.1e-07 58.2 78 43.6
CSS0023598 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 5.1e-07 58.2 55 47.3
AUR62005266 Chenopodium quinoa HOM05D000786 ORTHO05D000779 5.1e-07 58.2 43 60.5
Glyma.10G148500 Glycine max HOM05D013158 ORTHO05D000779 5.1e-07 58.2 124 36.3
MELO3C008511.2 Cucumis melo HOM05D000786 ORTHO05D000779 6.7e-07 57.8 118 30.5
TPR.G19780 Trifolium pratense HOM05D000786 ORTHO05D000779 6.7e-07 57.8 69 40.6
Zm00001eb396430 Zea mays HOM05D000786 ORTHO05D000779 6.7e-07 57.8 47 53.2
Aqoxy2G02520 Aquilegia oxysepala HOM05D000786 ORTHO05D000779 8.7e-07 57.4 49 53.1
BolC4t21685H Brassica oleracea HOM05D000786 ORTHO05D000779 8.7e-07 57.4 78 43.6
Duzib235G0670 Durio zibethinus HOM05D000786 ORTHO05D000779 8.7e-07 57.4 79 38.0
Nitab4.5_0001519g0070 Nicotiana tabacum HOM05D000786 ORTHO05D000779 8.7e-07 57.4 46 52.2
Nitab4.5_0001790g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 8.7e-07 57.4 74 40.5
Os03g0302500 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 8.7e-07 57.4 47 51.1
Phvul.007G200100 Phaseolus vulgaris HOM05D013158 ORTHO05D000779 8.7e-07 57.4 109 34.9
Solyc07g040730.1 Solanum lycopersicum HOM05D000786 ORTHO05D000779 8.7e-07 57.4 46 52.2
Sopen07g019470 Solanum pennellii HOM05D000786 ORTHO05D000779 8.7e-07 57.4 46 52.2
PGSC0003DMG400031801 Solanum tuberosum HOM05D000786 ORTHO05D000779 8.7e-07 57.4 64 43.8
PGSC0003DMG400032797 Solanum tuberosum HOM05D000786 ORTHO05D000779 8.7e-07 57.4 46 52.2
CiPaw.07G114700 Carya illinoinensis HOM05D000786 ORTHO05D000779 1.1e-06 57.0 45 55.6
ClCG03G015430 Citrullus lanatus HOM05D000786 ORTHO05D000779 1.1e-06 57.0 80 42.5
ClCG06G009930 Citrullus lanatus HOM05D000786 ORTHO05D000779 1.1e-06 57.0 114 31.6
Ciclev10022952m.g Citrus clementina HOM05D000786 ORTHO05D000779 1.1e-06 57.0 79 38.0
Duzib133G0956 Durio zibethinus HOM05D000786 ORTHO05D000779 1.1e-06 57.0 79 36.7
Glyma.13G348000 Glycine max HOM05D000786 ORTHO05D000779 1.1e-06 57.0 72 38.9
Medtr7g109290 Medicago truncatula HOM05D000786 ORTHO05D000779 1.1e-06 57.0 44 54.5
C04p00400 Brassica napus HOM05D000786 ORTHO05D000779 1.5e-06 56.6 79 40.5
Thhalv10001686m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 1.5e-06 56.6 48 50.0
Glyma.19G214700 Glycine max HOM05D000786 ORTHO05D000779 1.5e-06 56.6 62 46.8
CAN.G57.13 Capsicum annuum HOM05D000786 ORTHO05D000779 1.9e-06 56.2 46 54.3
Cfa005844 Carpinus fangiana HOM05D000786 ORTHO05D000779 1.9e-06 56.2 51 52.9
Ca_21289_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 1.9e-06 56.2 86 37.2
FvH4_6g07171 Fragaria vesca HOM05D013158 ORTHO05D000779 1.9e-06 56.2 128 35.9
Nitab4.5_0000116g0100 Nicotiana tabacum HOM05D000786 ORTHO05D000779 1.9e-06 56.2 53 47.2
Nitab4.5_0004002g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 1.9e-06 56.2 53 47.2
Nitab4.5_0011367g0010 Nicotiana tabacum HOM05D000786 ORTHO05D000779 1.9e-06 56.2 82 34.1
Peaxi162Scf00001g00286 Petunia axillaris HOM05D000786 ORTHO05D000779 1.9e-06 56.2 45 55.6
Solyc09g075650.3 Solanum lycopersicum HOM05D000786 ORTHO05D000779 1.9e-06 56.2 64 43.8
Cc06_g11610 Coffea canephora HOM05D000786 ORTHO05D000779 2.5e-06 55.8 46 52.2
Duzib177G0463 Durio zibethinus HOM05D000786 ORTHO05D000779 2.5e-06 55.8 43 60.5
Gohir.D12G130300 Gossypium hirsutum HOM05D000786 ORTHO05D000779 2.5e-06 55.8 74 37.8
Phvul.005G157200 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 2.5e-06 55.8 72 43.1
PGR119G1103 Punica granatum HOM05D000786 ORTHO05D000779 2.5e-06 55.8 46 52.2
ATR1125G005 Amborella trichopoda HOM05D000786 ORTHO05D000779 3.3e-06 55.5 75 41.3
AL4G47040 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 3.3e-06 55.5 49 51.0
Cpa.g.sc25.79 Carica papaya HOM05D000786 ORTHO05D000779 3.3e-06 55.5 72 40.3
Cfa003058 Carpinus fangiana HOM05D000786 ORTHO05D000779 3.3e-06 55.5 50 50.0
Potri.001G197700 Populus trichocarpa HOM05D000786 ORTHO05D000779 3.3e-06 55.5 46 52.2
Potri.013G010600 Populus trichocarpa HOM05D000786 ORTHO05D000779 3.3e-06 55.5 51 51.0
QL02p062146 Quercus lobata HOM05D000786 ORTHO05D000779 3.3e-06 55.5 99 33.3
QL12p028929 Quercus lobata HOM05D000786 ORTHO05D000779 3.3e-06 55.5 45 53.3
CsaV3_4G001090 Cucumis sativus L. HOM05D000786 ORTHO05D000779 4.3e-06 55.1 45 53.3
Eucgr.F03151 Eucalyptus grandis HOM05D000786 ORTHO05D000779 4.3e-06 55.1 78 37.2
FAN09G2338 Fragaria x ananassa HOM05D013158 ORTHO05D000779 4.3e-06 55.1 116 37.9
Glyma.03G218000 Glycine max HOM05D000786 ORTHO05D000779 4.3e-06 55.1 44 52.3
Manes.01G225400 Manihot esculenta HOM05D000786 ORTHO05D000779 4.3e-06 55.1 45 55.6
Manes.05G001600 Manihot esculenta HOM05D000786 ORTHO05D000779 4.3e-06 55.1 77 39.0
Phvul.001G211500 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 4.3e-06 55.1 44 52.3
Psat6g163480 Pisum sativum HOM05D000786 ORTHO05D000779 4.3e-06 55.1 64 42.2
SalBow4G2499 Salvia bowleyana HOM05D000786 ORTHO05D000779 4.3e-06 55.1 51 51.0
Zm00001eb014190 Zea mays HOM05D000786 ORTHO05D000779 4.3e-06 55.1 47 48.9
CSS0019360 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 5.6e-06 54.7 74 39.2
CANSAT56G0558 Cannabis sativa HOM05D000786 ORTHO05D000779 5.6e-06 54.7 46 50.0
Ca_10303_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 5.6e-06 54.7 62 43.5
ClCG10G011210 Citrullus lanatus HOM05D000786 ORTHO05D000779 5.6e-06 54.7 45 51.1
Os07g0690200 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 5.6e-06 54.7 45 57.8
Potri.003G043600 Populus trichocarpa HOM05D000786 ORTHO05D000779 5.6e-06 54.7 75 37.3
Sabra06G0116700 Salix brachista HOM05D000786 ORTHO05D000779 5.6e-06 54.7 46 50.0
vmacro03014 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 5.6e-06 54.7 45 53.3
HPP92_025190 Vanilla planifolia HOM05D000786 ORTHO05D000779 5.6e-06 54.7 45 55.6
Cc02_g34770 Coffea canephora HOM05D000786 ORTHO05D000779 7.4e-06 54.3 36 66.7
Cc08_g11850 Coffea canephora HOM05D000786 ORTHO05D000779 7.4e-06 54.3 43 55.8
Migut.B00992 Erythranthe guttata HOM05D000786 ORTHO05D000779 7.4e-06 54.3 43 55.8
Gorai.008G141600 Gossypium raimondii HOM05D000786 ORTHO05D000779 7.4e-06 54.3 73 37.0
Lj3g0017602 Lotus japonicus HOM05D000786 ORTHO05D000779 7.4e-06 54.3 52 46.2
Medtr1g087730 Medicago truncatula HOM05D000786 ORTHO05D000779 7.4e-06 54.3 52 50.0
Sabra01G0143900 Salix brachista HOM05D000786 ORTHO05D000779 7.4e-06 54.3 46 52.2
Thecc.01G309800 Theobroma cacao HOM05D000786 ORTHO05D000779 7.4e-06 54.3 56 46.4
unitig_748.g7530 Utricularia gibba HOM05D000786 ORTHO05D000779 7.4e-06 54.3 45 53.3
Zm00001eb111850 Zea mays HOM05D000786 ORTHO05D000779 7.4e-06 54.3 41 61.0
Aa31LG10G16450 Aethionema arabicum HOM05D000786 ORTHO05D000779 9.6e-06 53.9 49 49.0
AT2G47480 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 9.6e-06 53.9 42 54.8
EL10Ac4g09862 Beta vulgaris HOM05D000786 ORTHO05D000779 9.6e-06 53.9 43 55.8
Haze_05005 Corylus avellana HOM05D000786 ORTHO05D000779 9.6e-06 53.9 45 51.1
MELO3C017928.2 Cucumis melo HOM05D000786 ORTHO05D000779 9.6e-06 53.9 45 51.1
Dinv37893 Davidia involucrata HOM05D000786 ORTHO05D000779 9.6e-06 53.9 80 36.2
Glyma.17G053400 Glycine max HOM05D000786 ORTHO05D000779 9.6e-06 53.9 46 50.0
Gohir.D04G008600 Gossypium hirsutum HOM05D000786 ORTHO05D000779 9.6e-06 53.9 79 39.2
Gorai.012G010400 Gossypium raimondii HOM05D000786 ORTHO05D000779 9.6e-06 53.9 79 39.2
Prupe.1G409100 Prunus persica HOM05D000786 ORTHO05D000779 9.6e-06 53.9 57 43.9
PGR119G0416 Punica granatum HOM05D000786 ORTHO05D000779 9.6e-06 53.9 57 42.1
Sed0011211 Sechium edule HOM05D000786 ORTHO05D000779 9.6e-06 53.9 41 56.1
Sed0019056 Sechium edule HOM05D000786 ORTHO05D000779 9.6e-06 53.9 115 30.4


User provided reference genes

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