Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 6.7e-144 514.2 305 100.0
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 8.0e-137 490.7 305 89.2
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 1.2e-129 466.8 305 92.5
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 2.2e-123 446.0 305 83.0
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 1.1e-122 443.7 305 84.3
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.1e-121 439.5 309 84.8
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 4.0e-120 435.3 307 82.4
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 4.1e-117 425.2 309 79.3
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 7.0e-117 424.5 305 81.0
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 5.9e-116 421.4 306 77.5
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 6.6e-115 417.9 306 78.8
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 9.8e-103 377.5 312 75.0
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 2.2e-102 376.3 304 76.0
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 2.9e-102 375.9 319 71.5
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 6.0e-100 368.2 304 74.7
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 6.6e-99 364.8 305 72.1
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 8.6e-99 364.4 313 71.6
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.5e-98 363.6 305 75.4
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 9.5e-98 360.9 305 72.1
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 1.8e-96 356.7 308 67.5
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 2.3e-96 356.3 291 73.5
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 3.1e-96 355.9 306 73.9
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 3.1e-96 355.9 305 71.1
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 6.8e-96 354.8 309 72.8
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.2e-95 354.0 308 64.3
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 4.4e-95 352.1 305 71.1
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.3e-94 350.5 305 68.5
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.9e-93 346.7 311 71.7
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 9.2e-93 344.4 307 72.0
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.2e-92 344.0 304 63.2
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 4.6e-92 342.0 304 72.0
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 1.0e-91 340.9 251 82.5
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 2.3e-91 339.7 287 63.8
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 5.1e-91 338.6 319 69.0
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 8.6e-91 337.8 304 62.5
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.9e-90 336.7 310 69.0
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.5e-90 336.3 319 61.1
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.3e-90 335.9 304 66.8
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 4.7e-89 332.0 305 60.3
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 1.1e-88 330.9 341 65.4
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.4e-88 330.5 305 67.2
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.8e-88 330.1 278 71.6
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.3e-88 329.7 284 73.9
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 5.2e-88 328.6 305 60.0
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.2e-87 327.4 306 64.4
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 3.4e-87 325.9 306 70.3
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 9.9e-87 324.3 309 67.6
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.2e-86 323.2 309 67.3
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.9e-86 322.8 304 62.2
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 8.4e-86 321.2 306 63.1
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.1e-85 320.9 305 67.5
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.4e-85 320.5 273 63.7
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.9e-85 320.1 309 62.8
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.9e-85 320.1 304 63.8
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.5e-82 310.5 304 61.8
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 4.3e-82 308.9 305 57.4
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 5.6e-82 308.5 307 56.7
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 1.2e-81 307.4 300 56.3
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 2.8e-81 306.2 308 64.9
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.1e-80 304.3 170 87.1
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.8e-80 303.5 306 62.4
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 2.4e-80 303.1 323 63.5
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.2e-79 300.8 308 64.6
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 4.4e-79 298.9 186 81.2
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 7.6e-79 298.1 280 59.6
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.3e-78 297.4 343 60.1
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 6.4e-78 295.0 303 60.7
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 3.2e-77 292.7 337 60.8
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 2.1e-76 290.0 299 60.5
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 6.6e-75 285.0 306 55.9
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.5e-74 283.9 310 61.3
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 8.1e-73 278.1 306 59.5
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 5.3e-72 275.4 341 57.5
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.2e-71 274.2 295 62.4
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 1.5e-71 273.9 305 63.0
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 2.9e-70 269.6 311 60.1
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 2.4e-69 266.5 276 64.5
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.2e-69 265.8 189 69.8
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 7.1e-69 265.0 305 53.4
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.6e-68 263.8 305 62.0
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.7e-68 263.1 307 56.4
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 3.5e-68 262.7 305 61.6
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.3e-67 260.8 305 59.3
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.3e-67 260.0 314 57.3
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.9e-67 259.2 316 57.0
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 6.7e-67 258.5 305 56.1
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 9.0e-64 248.1 334 52.7
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.2e-63 247.7 309 56.3
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.2e-63 247.7 297 57.2
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 4.5e-63 245.7 304 56.6
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.9e-62 243.0 308 48.1
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.9e-62 243.0 308 48.1
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 7.1e-61 238.4 305 58.0
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 7.1e-61 238.4 310 55.2
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 9.3e-61 238.0 304 55.3
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 9.3e-61 238.0 304 55.3
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.2e-60 237.7 309 57.0
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 2.1e-60 236.9 307 57.0
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 7.9e-60 235.0 291 58.1
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.3e-59 234.2 305 54.8
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 1.3e-59 234.2 311 55.9
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 5.1e-59 232.3 308 48.7
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 5.1e-59 232.3 308 48.7
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 5.1e-59 232.3 308 48.7
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.4e-58 228.4 189 66.1
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 5.8e-55 218.8 308 50.3
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.3e-54 217.6 301 55.8
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.7e-54 217.2 311 55.3
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 8.4e-54 214.9 294 43.9
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 9.3e-53 211.5 274 56.9
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.2e-44 184.5 137 68.6
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.2e-44 184.5 119 73.1
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.9e-42 177.2 134 63.4
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 5.7e-42 175.6 158 58.2
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 8.2e-41 171.8 170 57.1
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 1.0e-35 154.8 214 48.6
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 3.7e-33 146.4 105 72.4
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.3e-27 127.1 166 60.8
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 8.8e-27 125.2 66 92.4
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 1.3e-25 121.3 134 51.5
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.1e-21 108.2 98 60.2
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 2.1e-20 104.0 95 60.0
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 2.1e-20 104.0 95 60.0
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 8.0e-20 102.1 132 58.3
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.4e-16 91.3 134 46.3
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.5e-15 86.3 48 79.2
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.6e-12 77.8 54 68.5
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 2.7e-12 77.0 122 41.8
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.1e-08 63.5 86 48.8
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.2e-07 61.6 91 41.8
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.7e-07 60.5 95 41.1
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.5e-07 60.1 29 89.7
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.5e-07 60.1 59 49.2
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 4.5e-07 59.7 85 36.5
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 5.9e-07 59.3 78 37.2
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 1.3e-06 58.2 48 50.0
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 1.3e-06 58.2 95 40.0
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 1.7e-06 57.8 53 50.9
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 1.7e-06 57.8 60 48.3
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.9e-06 57.0 114 33.3
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.9e-06 57.0 114 33.3
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 3.8e-06 56.6 56 48.2
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 3.8e-06 56.6 88 37.5
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 3.8e-06 56.6 62 48.4
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 3.8e-06 56.6 51 52.9
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 5.0e-06 56.2 56 48.2
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 5.0e-06 56.2 88 37.5
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 5.0e-06 56.2 60 50.0
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 5.0e-06 56.2 60 50.0
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 5.0e-06 56.2 88 37.5
EL10Ac8g19736 Beta vulgaris HOM05D005384 ORTHO05D006477 6.5e-06 55.8 78 35.9
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 6.5e-06 55.8 59 47.5
FAN03G3298 Fragaria x ananassa HOM05D005384 ORTHO05D006477 6.5e-06 55.8 68 38.2
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 6.5e-06 55.8 88 36.4
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 6.5e-06 55.8 84 38.1
SEGI_21811 Sequoiadendron giganteum HOM05D008111 ORTHO05D002142 6.5e-06 55.8 54 48.1
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 8.6e-06 55.5 50 52.0
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 8.6e-06 55.5 86 37.2
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 8.6e-06 55.5 83 41.0


User provided reference genes

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