Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G227200 Glycine max HOM05D008155 ORTHO05D010411 6.3e-79 297.4 148 100.0
Glyma.19G224100 Glycine max HOM05D008155 ORTHO05D010411 3.3e-56 221.9 148 82.4
Phvul.001G221000 Phaseolus vulgaris HOM05D008155 ORTHO05D010411 1.1e-46 190.3 154 70.8
VMungo1383G2435 Vigna mungo HOM05D008155 ORTHO05D010411 1.9e-43 179.5 154 66.2
TPR.G35721 Trifolium pratense HOM05D008155 ORTHO05D010411 1.9e-22 109.8 172 41.3
Medtr7g111230 Medicago truncatula HOM05D008155 ORTHO05D010411 2.3e-20 102.8 168 41.7
arahy.Tifrunner.gnm1.ann1.QRZ24D Arachis hypogaea HOM05D008155 ORTHO05D010411 1.1e-19 100.5 119 46.2
RcHm_v2.0_Chr3g0459031 Rosa chinensis HOM05D008155 ORTHO05D010411 1.5e-16 90.1 121 44.6
QL03p011396 Quercus lobata HOM05D008155 ORTHO05D010411 2.2e-15 86.3 102 44.1
Prupe.6G302400 Prunus persica HOM05D008155 ORTHO05D010411 6.4e-15 84.7 131 41.2
Cfa004403 Carpinus fangiana HOM05D008155 ORTHO05D010411 2.4e-14 82.8 152 34.9
Manes.09G182600 Manihot esculenta HOM05D008155 ORTHO05D010411 2.4e-14 82.8 94 45.7
Ciclev10029557m.g Citrus clementina HOM05D008155 ORTHO05D010411 9.2e-14 80.9 131 42.0
CSS0011875 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 3.5e-13 79.0 131 38.9
Haze_15003 Corylus avellana HOM05D008155 ORTHO05D010411 7.8e-13 77.8 152 34.2
FAN14G4286 Fragaria x ananassa HOM05D008155 ORTHO05D010411 7.8e-13 77.8 142 39.4
Solyc01g102460.4 Solanum lycopersicum HOM05D008155 ORTHO05D010411 7.8e-13 77.8 139 40.3
Sopen01g044900 Solanum pennellii HOM05D008155 ORTHO05D010411 7.8e-13 77.8 139 40.3
Migut.N00987 Erythranthe guttata HOM05D008155 ORTHO05D010411 3.0e-12 75.9 70 54.3
FAN02G1576 Fragaria x ananassa HOM05D008155 ORTHO05D010411 8.6e-12 74.3 154 37.0
Thecc.05G331400 Theobroma cacao HOM05D008155 ORTHO05D010411 1.1e-11 73.9 93 46.2
Gorai.013G241100 Gossypium raimondii HOM05D008155 ORTHO05D010411 1.5e-11 73.6 48 66.7
Manes.08G106200 Manihot esculenta HOM05D008155 ORTHO05D010411 1.9e-11 73.2 95 44.2
Gohir.A13G206400 Gossypium hirsutum HOM05D008155 ORTHO05D010411 4.3e-11 72.0 48 64.6
CANSAT54G1408 Cannabis sativa HOM05D008155 ORTHO05D010411 7.3e-11 71.2 132 37.9
MD12G1197100 Malus domestica HOM05D008155 ORTHO05D010411 1.2e-10 70.5 112 38.4
Hma1.2p1_0157F.1_g069510 Hydrangea macrophylla HOM05D008155 ORTHO05D010411 2.1e-10 69.7 150 35.3
TWI56G0796 Tripterygium wilfordii HOM05D008155 ORTHO05D010411 2.8e-10 69.3 160 36.9
THA.LOC104802769 Tarenaya hassleriana HOM05D008255 ORTHO05D011943 3.6e-10 68.9 95 42.1
CSS0018964 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 4.7e-10 68.6 139 38.1
MD04G1183800 Malus domestica HOM05D008155 ORTHO05D010411 4.7e-10 68.6 129 32.6
MSTRG.5176 Avicennia marina HOM05D008155 ORTHO05D010411 8.1e-10 67.8 139 36.0
CsaV3_2G007430 Cucumis sativus L. HOM05D008155 ORTHO05D010411 1.1e-09 67.4 147 37.4
PGSC0003DMG400018233 Solanum tuberosum HOM05D008155 ORTHO05D010411 1.1e-09 67.4 54 55.6
vmacro19804 Vaccinium macrocarpon HOM05D003050 ORTHO05D003513 1.1e-09 67.4 133 37.6
Atru.chr12.1507 Acer truncatum HOM05D008155 ORTHO05D010411 1.4e-09 67.0 54 57.4
Potri.013G000200 Populus trichocarpa HOM05D008155 ORTHO05D010411 1.4e-09 67.0 52 59.6
SalBow8G5556 Salvia bowleyana HOM05D008155 ORTHO05D010411 5.2e-09 65.1 56 53.6
Atru.chr12.1502 Acer truncatum HOM05D008155 ORTHO05D010411 6.8e-09 64.7 54 55.6
Sed0023159 Sechium edule HOM05D008155 ORTHO05D010411 6.8e-09 64.7 127 37.0
MELO3C004141.2 Cucumis melo HOM05D008155 ORTHO05D010411 8.9e-09 64.3 137 35.0
SalBow4G1718 Salvia bowleyana HOM05D008155 ORTHO05D010411 1.2e-08 63.9 130 31.5
SalBow4G2153 Salvia bowleyana HOM05D008155 ORTHO05D010411 1.2e-08 63.9 130 31.5
Thhalv10005106m.g Eutrema salsugineum HOM05D008255 ORTHO05D011943 1.5e-08 63.5 142 38.0
Potri.005G001100 Populus trichocarpa HOM05D008155 ORTHO05D010411 2.0e-08 63.2 52 53.8
Aa31LG11G10020 Aethionema arabicum HOM05D008255 ORTHO05D011943 3.4e-08 62.4 95 42.1
Cpa.g.sc48.233 Carica papaya HOM05D008155 ORTHO05D010411 5.8e-08 61.6 139 33.8
Rhsim11G0107200 Rhododendron simsii HOM05D008155 ORTHO05D010411 5.8e-08 61.6 73 42.5
ClCG02G014570 Citrullus lanatus HOM05D008155 ORTHO05D010411 7.6e-08 61.2 153 34.6
Oeu034763.2 Olea europaea HOM05D008155 ORTHO05D010411 7.6e-08 61.2 139 36.7
TAR362G0658 Trochodendron aralioides HOM05D008155 ORTHO05D010411 7.6e-08 61.2 129 31.8
Nitab4.5_0006193g0010 Nicotiana tabacum HOM05D008155 ORTHO05D010411 9.9e-08 60.8 37 67.6
TAR365G0599 Trochodendron aralioides HOM05D008155 ORTHO05D010411 9.9e-08 60.8 101 36.6
Sp2g21360 Schrenkiella parvula HOM05D008255 ORTHO05D011943 1.7e-07 60.1 56 53.6
Aqoxy7G02124 Aquilegia oxysepala HOM05D008155 ORTHO05D010411 2.9e-07 59.3 130 33.8
EL10Ac6g15313 Beta vulgaris HOM05D008155 ORTHO05D010411 8.4e-07 57.8 96 34.4
BcaNung03958 Brassica carinata HOM05D008255 ORTHO05D011943 1.1e-06 57.4 78 43.6
COL.COLO4_05473 Corchorus olitorius HOM05D008155 ORTHO05D010411 1.1e-06 57.4 152 36.2
AT5G26720 Arabidopsis thaliana HOM05D008255 ORTHO05D011943 1.4e-06 57.0 81 38.3
Sed0026568 Sechium edule HOM05D008155 ORTHO05D010411 1.4e-06 57.0 126 34.9
CARHR080400 Cardamine hirsuta HOM05D024382 ORTHO05D011943 1.9e-06 56.6 96 37.5
C07p41630 Brassica napus HOM05D008255 ORTHO05D011943 2.4e-06 56.2 35 68.6
Carub.0003s0531 Capsella rubella HOM05D024382 ORTHO05D011943 4.2e-06 55.5 96 39.6
BcaNung02826 Brassica carinata HOM05D008255 ORTHO05D011943 7.1e-06 54.7 33 69.7
BcaNung03956 Brassica carinata HOM05D008255 ORTHO05D011943 7.1e-06 54.7 33 69.7
BolC7t44700H Brassica oleracea HOM05D008255 ORTHO05D011943 7.1e-06 54.7 33 69.7
Sc03g0006010 Simmondsia chinensis HOM05D008155 ORTHO05D010411 9.2e-06 54.3 51 39.2


User provided reference genes

Program Settings