Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 5.1e-114 414.5 215 100.0
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 1.7e-93 346.3 215 85.6
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 3.0e-82 308.9 215 76.7
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 6.5e-77 291.2 213 73.7
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 2.0e-73 279.6 212 70.3
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 6.5e-69 264.6 211 66.4
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 1.2e-67 260.4 203 70.0
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 2.7e-67 259.2 220 66.4
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 6.8e-66 254.6 218 66.1
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 5.4e-63 245.0 213 63.8
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 5.9e-62 241.5 213 62.4
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 1.7e-61 240.0 213 63.8
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 3.8e-61 238.8 204 62.7
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 6.6e-61 238.0 214 63.1
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 1.5e-60 236.9 198 65.2
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 3.3e-60 235.7 195 64.6
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 9.5e-60 234.2 218 63.3
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 1.6e-59 233.4 194 64.9
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 2.1e-59 233.0 212 63.2
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 2.8e-59 232.6 214 63.1
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 6.1e-59 231.5 170 73.5
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 8.0e-59 231.1 187 68.4
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 8.0e-59 231.1 220 60.0
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 8.0e-59 231.1 220 60.0
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 8.0e-59 231.1 215 61.9
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 1.8e-58 229.9 170 72.9
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 2.3e-58 229.6 215 60.5
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 3.0e-58 229.2 212 61.3
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 4.0e-58 228.8 213 62.4
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 4.0e-58 228.8 180 69.4
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 6.8e-58 228.0 215 60.0
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 8.9e-58 227.6 204 63.2
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 1.5e-57 226.9 195 65.6
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 3.4e-57 225.7 215 61.9
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 5.7e-57 224.9 195 63.1
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 7.5e-57 224.6 192 64.6
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 9.8e-57 224.2 174 67.2
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 1.3e-56 223.8 172 69.2
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 2.9e-56 222.6 176 67.0
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 3.7e-56 222.2 182 69.8
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 4.9e-56 221.9 172 68.0
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 4.9e-56 221.9 202 61.4
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 6.4e-56 221.5 172 66.3
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 1.1e-55 220.7 165 72.7
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 1.4e-55 220.3 215 59.1
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 2.4e-55 219.5 173 69.4
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 2.4e-55 219.5 173 67.1
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 3.2e-55 219.2 172 66.3
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 4.1e-55 218.8 216 58.8
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 5.4e-55 218.4 173 68.2
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 1.2e-54 217.2 164 70.1
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 1.2e-54 217.2 173 68.2
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 2.7e-54 216.1 173 67.6
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 3.5e-54 215.7 160 69.4
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 3.5e-54 215.7 159 74.8
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 4.6e-54 215.3 193 62.7
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 5.9e-54 214.9 173 67.1
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 1.3e-53 213.8 192 62.0
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 1.3e-53 213.8 170 65.9
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 1.9e-52 209.9 209 59.8
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 4.3e-52 208.8 159 70.4
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 2.1e-51 206.5 213 54.9
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 4.7e-51 205.3 164 67.1
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 4.7e-51 205.3 151 70.9
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 6.2e-51 204.9 187 59.9
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 6.2e-51 204.9 171 63.2
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.4e-50 203.8 171 63.7
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 3.1e-50 202.6 158 69.6
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 4.0e-50 202.2 149 71.8
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 5.2e-50 201.8 180 61.7
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 8.9e-50 201.1 166 64.5
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 1.2e-49 200.7 164 65.9
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 1.2e-49 200.7 172 62.2
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 2.6e-49 199.5 158 67.7
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 2.6e-49 199.5 158 67.7
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 2.6e-49 199.5 158 67.7
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 2.6e-49 199.5 158 67.7
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 4.4e-49 198.7 152 68.4
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 4.4e-49 198.7 198 56.6
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 4.4e-49 198.7 158 67.7
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 4.4e-49 198.7 206 56.3
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 7.5e-49 198.0 175 62.3
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 1.7e-48 196.8 157 67.5
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 2.9e-48 196.1 157 67.5
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 4.1e-47 192.2 150 69.3
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 2.7e-46 189.5 173 61.8
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 6.6e-45 184.9 169 58.0
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 1.5e-44 183.7 150 60.7
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 9.5e-44 181.0 100 91.0
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 3.1e-42 176.0 97 91.8
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 2.6e-41 172.9 200 52.0
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 2.6e-41 172.9 205 50.7
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 7.5e-41 171.4 104 84.6
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 4.9e-40 168.7 121 68.6
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 3.2e-39 166.0 170 55.9
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 3.2e-39 166.0 108 78.7
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 1.2e-38 164.1 203 51.2
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 2.7e-38 162.9 209 48.3
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 1.5e-36 157.1 102 75.5
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 6.2e-35 151.8 121 68.6
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 1.3e-32 144.1 104 70.2
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 1.0e-29 134.4 172 49.4
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 5.1e-29 132.1 86 77.9
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 9.6e-28 127.9 145 46.9
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 1.8e-26 123.6 120 56.7
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 6.9e-26 121.7 172 44.8
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 3.4e-25 119.4 71 88.7
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 3.4e-25 119.4 71 88.7
HPP92_027923 Vanilla planifolia HOM05D006913 ORTHO05D008720 5.4e-23 112.1 65 84.6
Hma1.2p1_3252F.1_g334540 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 3.0e-21 106.3 135 48.9
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 6.6e-21 105.1 145 45.5
Nitab4.5_0001013g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 3.8e-16 89.4 93 51.6
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 3.5e-14 82.8 103 38.8
HPP92_027922 Vanilla planifolia HOM05D006913 ORTHO05D008720 3.0e-13 79.7 78 52.6
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 5.8e-09 65.5 40 72.5
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 5.8e-09 65.5 40 72.5


User provided reference genes

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