Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.3e-260 902.5 464 100.0
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 5.4e-246 854.0 464 95.0
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 1.4e-241 839.3 464 92.5
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 6.2e-234 813.9 467 90.1
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 5.5e-222 774.2 466 86.1
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 3.1e-217 758.4 466 84.5
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 2.1e-213 745.7 490 80.0
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 5.1e-212 741.1 468 83.1
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 7.4e-203 710.7 497 74.8
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 1.0e-199 700.3 501 74.5
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 7.5e-187 657.5 476 73.9
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 7.5e-187 657.5 467 72.2
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 2.2e-186 656.0 471 73.0
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 2.7e-184 649.0 467 71.1
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 1.0e-183 647.1 468 71.6
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 3.8e-183 645.2 468 72.9
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 6.6e-183 644.4 467 70.7
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 2.1e-181 639.4 469 70.8
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 3.6e-181 638.6 469 71.0
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 2.3e-180 636.0 469 70.4
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 5.2e-180 634.8 468 71.6
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 2.0e-179 632.9 467 69.8
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 2.6e-179 632.5 468 71.4
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 9.8e-179 630.6 470 71.3
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.3e-178 630.2 468 71.8
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.4e-177 625.9 468 71.4
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 1.2e-176 623.6 468 71.2
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.5e-176 622.1 468 70.7
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 7.8e-176 620.9 468 70.9
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 1.3e-175 620.2 497 67.6
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 1.9e-174 616.3 431 74.0
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.9e-174 616.3 468 70.5
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 4.3e-174 615.1 467 68.5
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 5.6e-174 614.8 468 69.7
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.4e-172 610.1 468 69.2
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 2.6e-171 605.9 467 67.5
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 8.6e-167 590.9 469 66.5
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.5e-166 589.3 468 67.3
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 6.2e-165 584.7 468 65.8
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 8.1e-165 584.3 468 66.9
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 6.8e-164 581.3 470 66.8
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 6.4e-162 574.7 491 63.3
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 8.3e-162 574.3 470 65.1
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 1.9e-161 573.2 470 65.3
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 4.1e-161 572.0 470 65.1
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 4.6e-160 568.5 468 65.6
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.7e-159 566.6 507 61.9
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 3.9e-159 565.5 470 64.0
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 6.6e-159 564.7 468 64.7
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.5e-158 562.8 467 63.8
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 3.6e-157 558.9 468 62.2
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 6.8e-156 554.7 469 64.6
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 6.8e-156 554.7 490 61.8
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.0e-155 553.1 522 58.8
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 6.4e-154 548.1 473 62.2
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 1.4e-153 547.0 475 62.9
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 2.4e-153 546.2 469 63.1
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 6.0e-152 541.6 489 60.3
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.3e-151 540.4 532 58.8
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 3.9e-151 538.9 441 65.1
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 7.3e-150 534.6 479 60.1
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.2e-149 533.9 480 60.2
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 3.1e-148 529.3 472 62.7
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 4.4e-147 525.4 489 59.3
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 2.4e-145 519.6 511 56.9
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 3.5e-144 515.8 469 61.0
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 2.8e-141 506.1 480 58.1
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 2.2e-138 496.5 498 57.4
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 5.4e-137 491.9 517 55.9
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 7.9e-136 488.0 491 57.0
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 5.6e-134 481.9 465 58.3
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 1.3e-133 480.7 481 57.8
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 6.2e-133 478.4 481 57.6
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 1.1e-132 477.6 479 56.4
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 5.3e-132 475.3 545 52.5
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 9.0e-132 474.6 466 57.9
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 1.5e-131 473.8 369 68.0
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 3.4e-131 472.6 353 71.1
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 5.8e-131 471.9 470 55.7
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.3e-130 470.7 488 55.9
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.3e-130 470.7 545 52.5
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 2.9e-130 469.5 479 56.6
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 3.8e-130 469.2 353 71.4
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 4.9e-130 468.8 482 56.8
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 9.3e-129 464.5 479 55.3
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.6e-128 463.8 502 52.0
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 2.7e-128 463.0 485 58.4
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 2.3e-127 459.9 482 55.0
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.5e-126 457.2 445 58.9
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.5e-126 456.4 482 54.4
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 1.8e-124 450.3 548 50.9
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 3.4e-123 446.0 491 54.6
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 4.5e-123 445.7 490 53.5
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 4.9e-122 442.2 420 57.9
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 8.4e-122 441.4 535 49.3
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 1.1e-121 441.0 480 56.2
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 1.9e-121 440.3 475 53.1
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 4.6e-120 435.6 491 53.6
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 1.8e-119 433.7 509 51.1
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 1.6e-117 427.2 557 46.1
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 8.2e-117 424.9 519 50.3
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.0e-114 417.9 515 49.9
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 3.0e-111 406.4 451 52.3
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.1e-110 404.4 321 67.0
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 3.7e-109 399.4 489 51.1
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.9e-105 387.1 319 64.3
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 2.2e-98 363.6 254 76.0
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 5.0e-74 282.7 257 62.3
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 2.1e-72 277.3 219 66.2
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 2.7e-72 276.9 360 46.1
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 3.0e-71 273.5 219 65.3
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 3.4e-70 270.0 264 58.0
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 3.1e-68 263.5 218 64.2
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.3e-66 257.3 174 71.8
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.2e-59 235.0 216 58.3
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 1.5e-57 228.0 478 35.4
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.5e-51 206.8 496 34.3
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 4.3e-49 199.9 367 40.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 6.2e-48 196.1 410 39.0
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.4e-47 194.9 446 36.1
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.8e-37 160.2 425 32.7
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.4e-36 158.3 466 28.5
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 2.4e-36 157.5 102 74.5
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 7.1e-36 156.0 460 32.6
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 6.2e-32 142.9 472 30.9
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 3.2e-28 130.6 182 42.9
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.4e-23 115.2 476 28.8
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 1.2e-22 112.1 154 42.9
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.2e-19 102.1 136 41.9
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 1.2e-19 102.1 81 66.7
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 3.9e-18 97.1 116 46.6
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 6.0e-11 73.2 91 52.7
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 1.3e-10 72.0 41 78.0


User provided reference genes

Program Settings