Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G218900 Glycine max HOM05D001935 ORTHO05D010109 1.1e-90 336.7 172 100.0
Phvul.001G212300 Phaseolus vulgaris HOM05D001935 ORTHO05D010109 2.1e-62 242.7 172 75.6
Glyma.19G215700 Glycine max HOM05D001935 ORTHO05D010109 4.0e-61 238.4 172 74.4
VMungo1383G2590 Vigna mungo HOM05D001935 ORTHO05D010109 3.5e-57 225.3 172 74.4
Lj1g0023097 Lotus japonicus HOM05D001935 ORTHO05D010109 3.1e-45 185.7 172 61.0
Medtr7g109420 Medicago truncatula HOM05D001935 ORTHO05D010109 3.7e-38 162.2 171 54.4
Ca_09205_v3 Cicer arietinum L. HOM05D001935 ORTHO05D010109 5.8e-36 154.8 179 53.6
Psat3g020520 Pisum sativum HOM05D001935 ORTHO05D010109 1.4e-34 150.2 171 53.8
TPR.G4060 Trifolium pratense HOM05D001935 ORTHO05D010109 6.0e-33 144.8 181 51.4
Cpa.g.sc18.27 Carica papaya HOM05D001935 ORTHO05D010109 4.8e-30 135.2 179 45.8
Actinidia21004 Actinidia chinensis HOM05D001136 ORTHO05D001144 4.2e-26 122.1 148 45.3
TWI36G1013 Tripterygium wilfordii HOM05D001935 ORTHO05D010109 2.7e-25 119.4 178 41.6
Thecc.01G311900 Theobroma cacao HOM05D001935 ORTHO05D010109 1.3e-24 117.1 147 43.5
TAR633G2657 Trochodendron aralioides HOM05D001935 ORTHO05D010109 5.1e-24 115.2 144 45.8
Manes.01G226900 Manihot esculenta HOM05D001935 ORTHO05D010109 2.5e-23 112.8 141 42.6
Haze_05029 Corylus avellana HOM05D001935 ORTHO05D010109 3.3e-23 112.5 178 41.0
QL12p020164 Quercus lobata HOM05D001935 ORTHO05D010109 7.4e-23 111.3 177 40.1
Duzib138G0891 Durio zibethinus HOM05D001935 ORTHO05D010109 2.2e-22 109.8 181 38.1
TAR362G0690 Trochodendron aralioides HOM05D001136 ORTHO05D010109 2.2e-22 109.8 145 46.9
Potri.016G128800 Populus trichocarpa HOM05D001935 ORTHO05D010109 6.3e-22 108.2 181 37.0
Cfa005813 Carpinus fangiana HOM05D001935 ORTHO05D010109 8.2e-22 107.8 177 39.0
Gohir.D07G132400 Gossypium hirsutum HOM05D001935 ORTHO05D010109 3.1e-21 105.9 173 39.3
Gorai.001G143800 Gossypium raimondii HOM05D001935 ORTHO05D010109 3.1e-21 105.9 173 39.3
Atru.chr5.1024 Acer truncatum HOM05D001935 ORTHO05D010109 6.9e-21 104.8 188 38.8
Gohir.A07G128000 Gossypium hirsutum HOM05D001935 ORTHO05D010109 6.9e-21 104.8 173 39.3
COL.COLO4_23245 Corchorus olitorius HOM05D001935 ORTHO05D010109 9.1e-21 104.4 148 37.2
Sabra06G0082000 Salix brachista HOM05D001935 ORTHO05D010109 9.1e-21 104.4 175 38.9
Atru.chr5.1021 Acer truncatum HOM05D001935 ORTHO05D010109 1.5e-20 103.6 188 38.3
CSS0010042 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 3.4e-20 102.4 162 38.9
CSS0012652 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 3.4e-20 102.4 162 38.9
MELO3C015930.2 Cucumis melo HOM05D001935 ORTHO05D010109 3.4e-20 102.4 149 43.6
Sabra16G0129700 Salix brachista HOM05D001935 ORTHO05D010109 4.5e-20 102.1 181 37.6
Dinv10085 Davidia involucrata HOM05D001935 ORTHO05D010109 5.9e-20 101.7 109 48.6
Aqoxy2G01830 Aquilegia oxysepala HOM05D001935 ORTHO05D010109 7.7e-20 101.3 148 40.5
CiPaw.07G116400 Carya illinoinensis HOM05D001935 ORTHO05D010109 1.3e-19 100.5 154 40.3
Potri.006G105600 Populus trichocarpa HOM05D001935 ORTHO05D010109 1.3e-19 100.5 178 36.0
Potri.006G105500 Populus trichocarpa HOM05D001935 ORTHO05D010109 2.2e-19 99.8 178 36.0
Rhsim13G0005200 Rhododendron simsii HOM05D001935 ORTHO05D010109 3.8e-19 99.0 148 38.5
Gorai.008G140400 Gossypium raimondii HOM05D001935 ORTHO05D010109 1.1e-18 97.4 143 38.5
Gohir.D11G115100 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.4e-18 97.1 141 38.3
Gohir.D12G129300 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.4e-18 97.1 143 38.5
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.9e-18 96.7 113 46.9
Gohir.A11G109500 Gossypium hirsutum HOM05D001935 ORTHO05D010109 3.2e-18 95.9 171 35.7
Oeu038015.2 Olea europaea HOM05D001935 ORTHO05D010109 3.2e-18 95.9 155 38.7
Gohir.A12G125800 Gossypium hirsutum HOM05D001935 ORTHO05D010109 4.2e-18 95.5 143 37.1
Dinv10084 Davidia involucrata HOM05D001935 ORTHO05D010109 7.2e-18 94.7 117 42.7
CSS0036092 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 9.4e-18 94.4 146 39.7
Gorai.007G123300 Gossypium raimondii HOM05D001935 ORTHO05D010109 1.2e-17 94.0 141 38.3
EL10As5g23516 Beta vulgaris HOM05D001935 ORTHO05D010109 2.1e-17 93.2 178 36.5
Sed0028026 Sechium edule HOM05D001935 ORTHO05D010109 4.7e-17 92.0 145 40.7
Hma1.2p1_0486F.1_g163095 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 7.9e-17 91.3 176 35.8
Hma1.2p1_0486F.1_g163120 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 7.9e-17 91.3 176 35.8
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.0e-16 90.9 109 48.6
ClCG09G005160 Citrullus lanatus HOM05D001935 ORTHO05D010109 3.0e-16 89.4 149 39.6
CiPaw.08G090700 Carya illinoinensis HOM05D001935 ORTHO05D010109 3.9e-16 89.0 171 35.1
AUR62011822 Chenopodium quinoa HOM05D001935 ORTHO05D010109 8.8e-16 87.8 144 34.7
Rhsim13G0005300 Rhododendron simsii HOM05D001935 ORTHO05D010109 8.8e-16 87.8 146 36.3
Ciclev10022487m.g Citrus clementina HOM05D001935 ORTHO05D010109 1.5e-15 87.0 161 35.4
SalBow3G1122 Salvia bowleyana HOM05D001935 ORTHO05D010109 1.5e-15 87.0 173 36.4
PGR044G2318 Punica granatum HOM05D001935 ORTHO05D010109 3.3e-15 85.9 173 30.6
Ah.02g112210 Amaranthus hybridus HOM05D001935 ORTHO05D010109 5.7e-15 85.1 158 34.2
Ah.11g049310 Amaranthus hybridus HOM05D001935 ORTHO05D010109 9.7e-15 84.3 182 35.2
CsaV3_7G029910 Cucumis sativus L. HOM05D001935 ORTHO05D010109 1.7e-14 83.6 78 53.8
Sed0011579 Sechium edule HOM05D001935 ORTHO05D010109 1.7e-14 83.6 145 37.9
Eucgr.H01053 Eucalyptus grandis HOM05D001935 ORTHO05D010109 3.7e-14 82.4 156 34.0
EL10As5g23517 Beta vulgaris HOM05D001935 ORTHO05D010109 4.8e-14 82.0 153 33.3
ATR0706G209 Amborella trichopoda HOM05D001935 ORTHO05D010109 6.3e-14 81.6 160 35.0
GSVIVG01028106001 Vitis vinifera HOM05D001935 ORTHO05D010109 6.3e-14 81.6 71 50.7
AUR62024666 Chenopodium quinoa HOM05D001935 ORTHO05D010109 8.2e-14 81.3 148 33.1
DCAR_005768 Daucus carota HOM05D001935 ORTHO05D010109 4.5e-12 75.5 117 38.5
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 4.5e-12 75.5 107 38.3
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.0e-11 74.3 107 39.3
Sabra12G0031700 Salix brachista HOM05D007478 ORTHO05D001700 1.3e-11 73.9 174 29.3
Thecc.03G058400 Theobroma cacao HOM05D007478 ORTHO05D001700 2.5e-10 69.7 176 31.2
Eucgr.B00987 Eucalyptus grandis HOM05D007478 ORTHO05D001700 3.2e-10 69.3 172 30.2
QL10p030590 Quercus lobata HOM05D007478 ORTHO05D001700 3.2e-10 69.3 175 31.4
Eucgr.B00885 Eucalyptus grandis HOM05D007478 ORTHO05D001700 4.2e-10 68.9 172 30.2
Glyma.05G246800 Glycine max HOM05D007478 ORTHO05D001700 4.2e-10 68.9 181 29.8
Glyma.08G055200 Glycine max HOM05D007478 ORTHO05D001700 4.2e-10 68.9 181 30.9
Phvul.002G330900 Phaseolus vulgaris HOM05D007478 ORTHO05D001700 4.2e-10 68.9 178 31.5
CiPaw.15G144400 Carya illinoinensis HOM05D007478 ORTHO05D001700 1.2e-09 67.4 179 30.2
Potri.015G036800 Populus trichocarpa HOM05D007478 ORTHO05D001700 1.2e-09 67.4 175 30.3
Dinv12075 Davidia involucrata HOM05D001935 ORTHO05D010109 2.1e-09 66.6 92 39.1
VMungo0251G2682 Vigna mungo HOM05D007478 ORTHO05D001700 2.7e-09 66.2 178 31.5
TWI81G0631 Tripterygium wilfordii HOM05D007478 ORTHO05D001700 6.1e-09 65.1 182 29.7
unitig_0.g277 Utricularia gibba HOM05D001935 ORTHO05D010109 1.0e-08 64.3 147 32.0
Lj4g0014270 Lotus japonicus HOM05D007478 ORTHO05D001700 1.4e-08 63.9 179 31.3
Sed0016646 Sechium edule HOM05D007478 ORTHO05D001700 2.3e-08 63.2 184 28.3
Aqoxy5G00397 Aquilegia oxysepala HOM05D007478 ORTHO05D001700 3.0e-08 62.8 173 28.9
Cpa.g.sc3.382 Carica papaya HOM05D007478 ORTHO05D001700 3.0e-08 62.8 188 28.7
FvH4_5g17470 Fragaria vesca HOM05D007478 ORTHO05D001700 3.0e-08 62.8 153 29.4
Ah.02g112200 Amaranthus hybridus HOM05D007400 ORTHO05D009351 3.9e-08 62.4 114 30.7
EL10Ac5g10513 Beta vulgaris HOM05D001935 ORTHO05D010109 3.9e-08 62.4 92 38.0
CSS0049402 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D001700 3.9e-08 62.4 176 29.0
MSTRG.2193 Avicennia marina HOM05D001935 ORTHO05D001700 5.2e-08 62.0 177 26.6
Duzib068G1147 Durio zibethinus HOM05D007478 ORTHO05D001700 5.2e-08 62.0 173 30.1
Potri.012G045600 Populus trichocarpa HOM05D007478 ORTHO05D001700 5.2e-08 62.0 176 29.0
RcHm_v2.0_Chr7g0178221 Rosa chinensis HOM05D007478 ORTHO05D001700 5.2e-08 62.0 153 30.1
Ca_17182_v3 Cicer arietinum L. HOM05D007478 ORTHO05D001700 6.7e-08 61.6 182 31.3
FAN18G0488 Fragaria x ananassa HOM05D007478 ORTHO05D001700 6.7e-08 61.6 153 28.8
Manes.14G171900 Manihot esculenta HOM05D007478 ORTHO05D001700 6.7e-08 61.6 189 27.0
SGA_v2.0_scaffold376G50276 Striga asiatica HOM05D001935 ORTHO05D010109 6.7e-08 61.6 144 35.4
EL10As7g23792 Beta vulgaris HOM05D007478 ORTHO05D001700 8.8e-08 61.2 181 28.2
Dinv16185 Davidia involucrata HOM05D001935 ORTHO05D001700 1.1e-07 60.8 116 28.4
GSVIVG01008464001 Vitis vinifera HOM05D007478 ORTHO05D001700 1.1e-07 60.8 176 29.0
FAN08G3433 Fragaria x ananassa HOM05D007478 ORTHO05D001700 1.5e-07 60.5 153 28.8
Cc04_g06130 Coffea canephora HOM05D007478 ORTHO05D001700 2.0e-07 60.1 176 26.1
COL.COLO4_05000 Corchorus olitorius HOM05D007478 ORTHO05D001700 2.0e-07 60.1 181 26.5
Os01g0686000 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D001700 2.0e-07 60.1 80 37.5
Sabra08G0096000 Salix brachista HOM05D001935 ORTHO05D001700 2.0e-07 60.1 142 32.4
Sabra15G0031300 Salix brachista HOM05D007478 ORTHO05D001700 2.0e-07 60.1 175 28.6
HanXRQChr17g0567051 Helianthus annuus HOM05D001935 ORTHO05D001700 2.6e-07 59.7 147 29.3
Peaxi162Scf00119g00143 Petunia axillaris HOM05D001935 ORTHO05D001700 2.6e-07 59.7 145 31.0
ClCG06G014210 Citrullus lanatus HOM05D007478 ORTHO05D001700 3.3e-07 59.3 187 27.8
HanXRQChr15g0477371 Helianthus annuus HOM05D001935 ORTHO05D001700 3.3e-07 59.3 181 30.9
Sopen04g002660 Solanum pennellii HOM05D001935 ORTHO05D001700 3.3e-07 59.3 152 27.6
Nitab4.5_0000414g0010 Nicotiana tabacum HOM05D001935 ORTHO05D001700 4.4e-07 58.9 143 28.7
Nitab4.5_0001648g0030 Nicotiana tabacum HOM05D001935 ORTHO05D001700 4.4e-07 58.9 158 28.5
Psat4g000040 Pisum sativum HOM05D007478 ORTHO05D001700 4.4e-07 58.9 144 32.6
Solyc04g007580.1 Solanum lycopersicum HOM05D001935 ORTHO05D001700 4.4e-07 58.9 152 27.6
Sed0010378 Sechium edule HOM05D001935 ORTHO05D001700 5.7e-07 58.5 111 33.3
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 7.4e-07 58.2 104 40.4
Lalb_Chr16g0386951 Lupinus albus HOM05D007478 ORTHO05D001700 7.4e-07 58.2 179 29.6
FAN13G0345 Fragaria x ananassa HOM05D007478 ORTHO05D001700 9.7e-07 57.8 153 28.8
HanXRQChr07g0189891 Helianthus annuus HOM05D001935 ORTHO05D001700 9.7e-07 57.8 175 29.7
Hma1.2p1_0163F.1_g073010 Hydrangea macrophylla HOM05D007478 ORTHO05D001700 9.7e-07 57.8 173 27.7
Lj6P749T50 Lonicera japonica HOM05D001935 ORTHO05D001700 9.7e-07 57.8 146 28.8
PGSC0003DMG400005992 Solanum tuberosum HOM05D001935 ORTHO05D001700 9.7e-07 57.8 154 27.9
TAR629G0885 Trochodendron aralioides HOM05D007478 ORTHO05D001700 9.7e-07 57.8 176 29.0
Oeu044325.1 Olea europaea HOM05D001935 ORTHO05D001700 1.7e-06 57.0 110 30.9
Os01g0304400 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D010109 1.7e-06 57.0 180 27.8
Potri.008G127200 Populus trichocarpa HOM05D001935 ORTHO05D001700 1.7e-06 57.0 115 32.2
FvH4_4g26170 Fragaria vesca HOM05D001935 ORTHO05D001700 2.2e-06 56.6 117 29.1
FAN12G0731 Fragaria x ananassa HOM05D001935 ORTHO05D001700 2.2e-06 56.6 117 29.1
SEGI_39105 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 2.2e-06 56.6 107 30.8
Sc15g0005840 Simmondsia chinensis HOM05D007478 ORTHO05D001700 2.2e-06 56.6 179 29.1
Gohir.D05G318900 Gossypium hirsutum HOM05D001935 ORTHO05D001700 2.8e-06 56.2 114 29.8
Gorai.009G341800 Gossypium raimondii HOM05D001935 ORTHO05D001700 2.8e-06 56.2 114 29.8
MD09G1258400 Malus domestica HOM05D001935 ORTHO05D001700 2.8e-06 56.2 107 33.6
Oeu004315.1 Olea europaea HOM05D001935 ORTHO05D001700 2.8e-06 56.2 187 27.8
HPP92_004882 Vanilla planifolia HOM05D007478 ORTHO05D001700 2.8e-06 56.2 170 27.6
Oeu046159.1 Olea europaea HOM05D007478 ORTHO05D001700 3.7e-06 55.8 176 26.1
Ciclev10016694m.g Citrus clementina HOM05D001935 ORTHO05D001700 4.8e-06 55.5 105 33.3
MELO3C017371.2 Cucumis melo HOM05D007478 ORTHO05D001700 4.8e-06 55.5 187 27.3
FAN07G1185 Fragaria x ananassa HOM05D001935 ORTHO05D001700 4.8e-06 55.5 117 29.1
FAN12G2861 Fragaria x ananassa HOM05D001935 ORTHO05D001700 4.8e-06 55.5 117 29.1
SGA_v2.0_scaffold14G06923 Striga asiatica HOM05D001935 ORTHO05D001700 4.8e-06 55.5 109 29.4
FAN22G2316 Fragaria x ananassa HOM05D001935 ORTHO05D001700 6.3e-06 55.1 117 29.1
Lalb_Chr05g0221601 Lupinus albus HOM05D007478 ORTHO05D001700 6.3e-06 55.1 174 28.2
MELO3C005308.2 Cucumis melo HOM05D001935 ORTHO05D001700 8.2e-06 54.7 108 32.4
CsaV3_5G028470 Cucumis sativus L. HOM05D001935 ORTHO05D001700 8.2e-06 54.7 108 32.4
Os05g0552800 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D001700 8.2e-06 54.7 134 27.6
Sed0026428 Sechium edule HOM05D001935 ORTHO05D001700 8.2e-06 54.7 108 31.5


User provided reference genes

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