Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G215700 Glycine max HOM05D003556 ORTHO05D003404 8.6e-94 347.1 185 100.0
Glyma.19G212200 Glycine max HOM05D003556 ORTHO05D003404 4.0e-83 311.6 185 90.3
VMungo1309G0611 Vigna mungo HOM05D003556 ORTHO05D003404 4.8e-68 261.5 185 72.4
Phvul.001G209000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 6.2e-68 261.2 197 71.6
Phvul.009G236000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 9.0e-67 257.3 185 71.9
Phvul.001G208900 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 8.4e-65 250.8 193 69.4
Phvul.001G208700 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.1e-64 250.4 193 69.9
Phvul.001G208800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.0e-62 243.8 193 68.4
VMungo1383G0005 Vigna mungo HOM05D003556 ORTHO05D003404 2.5e-61 239.2 190 68.4
Phvul.001G208600 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.3e-60 236.9 193 66.3
Lj1g0023613 Lotus japonicus HOM05D003556 ORTHO05D003404 4.8e-60 235.0 181 68.0
VMungo0331G0621 Vigna mungo HOM05D003556 ORTHO05D003404 2.4e-59 232.6 188 69.1
VMungo1383G2652 Vigna mungo HOM05D003556 ORTHO05D003404 5.3e-59 231.5 178 69.7
Lalb_Chr04g0259851 Lupinus albus HOM05D003556 ORTHO05D003404 4.5e-58 228.4 181 70.7
Ca_09185_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 1.7e-57 226.5 163 70.6
Lalb_Chr15g0078461 Lupinus albus HOM05D003556 ORTHO05D003404 1.0e-54 217.2 178 66.3
Psat0s1683g0040 Pisum sativum HOM05D003556 ORTHO05D003404 2.5e-53 212.6 174 64.9
Lj5g0004990 Lotus japonicus HOM05D003556 ORTHO05D003404 5.7e-53 211.5 163 66.3
Medtr7g108865 Medicago truncatula HOM05D003556 ORTHO05D003404 5.7e-53 211.5 177 66.1
TPR.G9645 Trifolium pratense HOM05D003556 ORTHO05D003404 2.1e-52 209.5 176 65.9
Lalb_Chr02g0146451 Lupinus albus HOM05D003556 ORTHO05D003404 1.1e-51 207.2 165 63.0
Medtr4g071020 Medicago truncatula HOM05D003556 ORTHO05D003404 3.1e-51 205.7 178 62.4
TPR.G30505 Trifolium pratense HOM05D002265 ORTHO05D002400 1.7e-49 199.9 180 56.1
Ca_20910_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 1.1e-48 197.2 195 54.9
Glyma.10G017300 Glycine max HOM05D003556 ORTHO05D003404 1.6e-47 193.4 172 57.6
Psat7g183080 Pisum sativum HOM05D003556 ORTHO05D003404 2.1e-47 193.0 174 58.0
VMungo0720G1834 Vigna mungo HOM05D003556 ORTHO05D003404 3.6e-47 192.2 166 59.6
Glyma.02G016700 Glycine max HOM05D003556 ORTHO05D003404 3.9e-46 188.7 178 55.6
Phvul.007G246800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 3.9e-46 188.7 177 57.1
Lalb_Chr06g0166521 Lupinus albus HOM05D003556 ORTHO05D003404 6.7e-46 188.0 176 56.2
VMungo1309G2342 Vigna mungo HOM05D003556 ORTHO05D003404 6.3e-44 181.4 152 59.9
arahy.Tifrunner.gnm1.ann1.HDU51Y Arachis hypogaea HOM05D003556 ORTHO05D003404 4.5e-42 175.3 186 50.0
arahy.Tifrunner.gnm1.ann1.GMFP2F Arachis hypogaea HOM05D003556 ORTHO05D003404 1.7e-41 173.3 192 49.5
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 3.5e-26 122.5 165 41.2
Cfa005888 Carpinus fangiana HOM05D003556 ORTHO05D003404 7.2e-24 114.8 164 39.6
CANSAT25G1336 Cannabis sativa HOM05D003556 ORTHO05D003404 1.2e-23 114.0 149 40.9
CsaV3_4G000950 Cucumis sativus L. HOM05D003556 ORTHO05D003404 3.6e-23 112.5 177 37.3
ClCG10G011070 Citrullus lanatus HOM05D003556 ORTHO05D003404 1.4e-22 110.5 169 39.1
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 3.0e-22 109.4 156 39.7
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 6.7e-22 108.2 160 38.8
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 2.6e-21 106.3 144 38.2
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 2.6e-21 106.3 189 37.6
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 4.4e-21 105.5 174 37.9
MD11G1307600 Malus domestica HOM05D003556 ORTHO05D003404 5.7e-21 105.1 161 36.0
QL12p028082 Quercus lobata HOM05D003556 ORTHO05D003404 7.5e-21 104.8 178 34.3
FvH4_2g25950 Fragaria vesca HOM05D003556 ORTHO05D003404 1.7e-20 103.6 147 40.1
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.7e-20 103.6 147 40.1
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.7e-20 103.6 147 40.1
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 2.8e-20 102.8 147 39.5
MD03G1290800 Malus domestica HOM05D003556 ORTHO05D003404 8.2e-20 101.3 157 37.6
FAN27G3015 Fragaria x ananassa HOM05D003556 ORTHO05D003404 7.0e-19 98.2 147 39.5
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 1.2e-18 97.4 150 36.0
Sabra01G0098200 Salix brachista HOM05D003556 ORTHO05D003404 2.0e-18 96.7 172 36.0
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 2.7e-18 96.3 179 35.2
Potri.004G016500 Populus trichocarpa HOM05D003556 ORTHO05D003404 4.5e-18 95.5 186 34.4
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 1.7e-17 93.6 187 34.8
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 2.2e-17 93.2 177 34.5
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 2.2e-17 93.2 176 36.4
Rhsim13G0008900 Rhododendron simsii HOM05D003556 ORTHO05D003404 2.9e-17 92.8 149 34.9
RcHm_v2.0_Chr6g0294271 Rosa chinensis HOM05D003556 ORTHO05D003404 3.8e-17 92.4 148 34.5
Sed0000124 Sechium edule HOM05D003556 ORTHO05D003404 8.5e-17 91.3 176 34.1
Potri.001G127500 Populus trichocarpa HOM05D003556 ORTHO05D003404 1.1e-16 90.9 176 35.2
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 1.5e-16 90.5 175 34.9
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 1.5e-16 90.5 181 29.3
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 2.5e-16 89.7 148 37.8
Atru.chr5.1112 Acer truncatum HOM05D003556 ORTHO05D003404 3.2e-16 89.4 180 29.4
Cfa005889 Carpinus fangiana HOM05D003556 ORTHO05D003404 5.5e-16 88.6 150 36.0
Dinv33067 Davidia involucrata HOM05D003556 ORTHO05D003404 5.5e-16 88.6 167 32.9
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 5.5e-16 88.6 149 34.9
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 5.5e-16 88.6 149 34.2
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 1.2e-15 87.4 152 38.2
Aa31LG10G420 Aethionema arabicum HOM05D003556 ORTHO05D003404 2.7e-15 86.3 176 30.1
Lj2A1197T77 Lonicera japonica HOM05D003556 ORTHO05D003404 2.7e-15 86.3 163 34.4
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 2.7e-15 86.3 182 31.9
THA.LOC104825958 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 3.6e-15 85.9 181 30.4
Dinv19674 Davidia involucrata HOM05D003556 ORTHO05D003404 4.7e-15 85.5 192 30.7
AL1G63880 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 6.1e-15 85.1 177 29.4
Thhalv10029000m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 6.1e-15 85.1 152 32.9
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 6.1e-15 85.1 174 36.2
CANSAT25G0193 Cannabis sativa HOM05D003556 ORTHO05D003404 8.0e-15 84.7 165 32.7
CARHR250460 Cardamine hirsuta HOM05D003556 ORTHO05D003404 8.0e-15 84.7 152 32.9
Sp6g02140 Schrenkiella parvula HOM05D003556 ORTHO05D003404 8.0e-15 84.7 175 32.0
Sp1g41350 Schrenkiella parvula HOM05D003556 ORTHO05D003404 1.4e-14 84.0 173 30.1
Aa31LG5G1910 Aethionema arabicum HOM05D003556 ORTHO05D003404 1.8e-14 83.6 172 30.8
BcaC01g06767 Brassica carinata HOM05D003556 ORTHO05D003404 1.8e-14 83.6 175 30.9
BolC3t16082H Brassica oleracea HOM05D003556 ORTHO05D003404 1.8e-14 83.6 175 30.9
Carub.0001s4433 Capsella rubella HOM05D003556 ORTHO05D003404 1.8e-14 83.6 175 29.7
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 2.3e-14 83.2 175 33.7
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 3.0e-14 82.8 153 33.3
Carub.0006s3492 Capsella rubella HOM05D003556 ORTHO05D003404 4.0e-14 82.4 183 30.6
A06p00030 Brassica napus HOM05D003556 ORTHO05D003404 5.2e-14 82.0 178 28.7
BraA06t23219Z Brassica rapa HOM05D003556 ORTHO05D003404 5.2e-14 82.0 178 28.7
AL6G50890 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 6.8e-14 81.6 183 30.1
BcaB01g02062 Brassica carinata HOM05D003556 ORTHO05D003404 6.8e-14 81.6 175 32.0
Haze_04963 Corylus avellana HOM05D003556 ORTHO05D003404 6.8e-14 81.6 177 32.8
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 6.8e-14 81.6 172 32.6
A03p31140 Brassica napus HOM05D003556 ORTHO05D003404 8.8e-14 81.3 151 32.5
A08p00310 Brassica napus HOM05D003556 ORTHO05D003404 8.8e-14 81.3 177 29.9
C03p37950 Brassica napus HOM05D003556 ORTHO05D003404 8.8e-14 81.3 175 30.3
BraA08t32089Z Brassica rapa HOM05D003556 ORTHO05D003404 8.8e-14 81.3 177 29.9
BcaB01g02439 Brassica carinata HOM05D003556 ORTHO05D003404 1.2e-13 80.9 175 30.3
BraA03t12291Z Brassica rapa HOM05D003556 ORTHO05D003404 1.2e-13 80.9 151 32.5
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 1.5e-13 80.5 171 33.9
CARHR045450 Cardamine hirsuta HOM05D003556 ORTHO05D003404 2.0e-13 80.1 176 29.5
A02p24580 Brassica napus HOM05D003556 ORTHO05D003404 2.6e-13 79.7 181 30.9
C02p38810 Brassica napus HOM05D003556 ORTHO05D003404 2.6e-13 79.7 181 30.9
BolC2t09897H Brassica oleracea HOM05D003556 ORTHO05D003404 2.6e-13 79.7 181 30.9
BraA02t07448Z Brassica rapa HOM05D003556 ORTHO05D003404 2.6e-13 79.7 181 30.9
THA.LOC104822713 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 2.6e-13 79.7 172 32.0
TWI23G0284 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 2.6e-13 79.7 175 31.4
BcaC03g16110 Brassica carinata HOM05D003556 ORTHO05D003404 3.4e-13 79.3 182 30.2
BcaC04g24050 Brassica carinata HOM05D003556 ORTHO05D003404 3.4e-13 79.3 175 30.9
BcaC08g44217 Brassica carinata HOM05D003556 ORTHO05D003404 3.4e-13 79.3 149 30.9
A09p01710 Brassica napus HOM05D003556 ORTHO05D003404 3.4e-13 79.3 175 30.9
C06p16220 Brassica napus HOM05D003556 ORTHO05D003404 3.4e-13 79.3 149 30.9
C09p01780 Brassica napus HOM05D003556 ORTHO05D003404 3.4e-13 79.3 175 30.9
BolC6t36819H Brassica oleracea HOM05D003556 ORTHO05D003404 3.4e-13 79.3 149 30.9
BolC9t53113H Brassica oleracea HOM05D003556 ORTHO05D003404 3.4e-13 79.3 175 30.9
BraA09t35826Z Brassica rapa HOM05D003556 ORTHO05D003404 3.4e-13 79.3 175 30.9
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 3.4e-13 79.3 176 33.0
BcaB05g23608 Brassica carinata HOM05D003556 ORTHO05D003404 5.7e-13 78.6 175 29.7
Duzib138G0838 Durio zibethinus HOM05D003556 ORTHO05D003404 9.8e-13 77.8 148 31.8
Sed0018956 Sechium edule HOM05D003556 ORTHO05D003404 9.8e-13 77.8 174 30.5
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 1.3e-12 77.4 174 33.9
TWI14G0192 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 1.3e-12 77.4 175 28.0
BraA05t20629Z Brassica rapa HOM05D003556 ORTHO05D003404 1.7e-12 77.0 150 30.0
A05p17320 Brassica napus HOM05D003556 ORTHO05D003404 2.2e-12 76.6 150 30.0
Cpa.g.sc151.17 Carica papaya HOM05D003556 ORTHO05D003404 2.2e-12 76.6 157 34.4
Ciclev10023798m.g Citrus clementina HOM05D003556 ORTHO05D003404 2.2e-12 76.6 148 33.8
Thhalv10012280m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 2.2e-12 76.6 173 27.7
TWI59G1361 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 2.2e-12 76.6 182 28.6
AT1G55770 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 2.8e-12 76.3 173 28.9
Dinv40359 Davidia involucrata HOM05D003556 ORTHO05D003404 3.7e-12 75.9 166 32.5
Gohir.A08G042100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 3.7e-12 75.9 144 31.9
Gohir.D08G051900 Gossypium hirsutum HOM05D003556 ORTHO05D003404 6.3e-12 75.1 170 29.4
Gorai.004G052000 Gossypium raimondii HOM05D003556 ORTHO05D003404 6.3e-12 75.1 138 31.9
C03p93200 Brassica napus HOM05D003556 ORTHO05D003404 8.3e-12 74.7 177 28.8
BolC3t21618H Brassica oleracea HOM05D003556 ORTHO05D003404 8.3e-12 74.7 177 28.8
BcaB07g33190 Brassica carinata HOM05D003556 ORTHO05D003404 1.4e-11 73.9 167 29.3
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 1.4e-11 73.9 148 30.4
Zm00001eb340180 Zea mays HOM05D003556 ORTHO05D003404 1.4e-11 73.9 182 29.7
BcaB02g10800 Brassica carinata HOM05D003556 ORTHO05D003404 4.1e-11 72.4 149 29.5
Thecc.09G068900 Theobroma cacao HOM05D001445 ORTHO05D003404 4.1e-11 72.4 170 29.4
TWI56G0141 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 5.4e-11 72.0 172 30.2
AUR62008689 Chenopodium quinoa HOM05D003556 ORTHO05D003404 9.1e-11 71.2 148 30.4
EL10Ac7g18176 Beta vulgaris HOM05D003556 ORTHO05D003404 1.2e-10 70.9 148 30.4
AUR62025555 Chenopodium quinoa HOM05D003556 ORTHO05D003404 1.2e-10 70.9 148 31.1
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 2.0e-10 70.1 171 31.6
AT4G02250 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 2.7e-10 69.7 134 32.1
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 3.5e-10 69.3 151 33.8
Rhsim05G0137100 Rhododendron simsii HOM05D003556 ORTHO05D003404 4.5e-10 68.9 148 31.1
Nn1g02148 Nelumbo nucifera HOM05D001445 ORTHO05D001261 1.0e-09 67.8 184 30.4
Ciclev10032808m.g Citrus clementina HOM05D001445 ORTHO05D001261 3.8e-09 65.9 142 31.0
Prupe.4G001200 Prunus persica HOM05D008403 ORTHO05D010317 1.1e-08 64.3 160 32.5
CiPaw.07G023500 Carya illinoinensis HOM05D003556 ORTHO05D003404 1.5e-08 63.9 168 30.4
CDE02G0716 Ceratophyllum demersum HOM05D000085 ORTHO05D000158 1.5e-08 63.9 149 32.9
PSO782G0985 Papaver somniferum HOM05D001445 ORTHO05D001261 1.9e-08 63.5 190 25.8
Potri.006G134900 Populus trichocarpa HOM05D004113 ORTHO05D003404 2.5e-08 63.2 185 27.6
Cfa006653 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.2e-08 62.4 177 31.1
CiPaw.11G087100 Carya illinoinensis HOM05D001445 ORTHO05D001261 4.2e-08 62.4 180 27.2
HPP92_014651 Vanilla planifolia HOM05D001445 ORTHO05D001261 5.5e-08 62.0 184 28.8
Thecc.03G235400 Theobroma cacao HOM05D001445 ORTHO05D001261 1.2e-07 60.8 158 27.2
DCAR_002850 Daucus carota HOM05D003556 ORTHO05D003404 3.6e-07 59.3 194 25.8
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 6.1e-07 58.5 156 32.1
PSO081G0137 Papaver somniferum HOM05D001445 ORTHO05D001261 1.0e-06 57.8 184 28.3
TAR375G0630 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.4e-06 57.4 181 29.8
RcHm_v2.0_Chr4g0432401 Rosa chinensis HOM05D001578 ORTHO05D001207 2.3e-06 56.6 152 29.6
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 3.0e-06 56.2 173 25.4
FvH4_5g20950 Fragaria vesca HOM05D001445 ORTHO05D001261 3.0e-06 56.2 186 28.0
CANSAT54G0162 Cannabis sativa HOM05D003556 ORTHO05D003404 4.0e-06 55.8 142 28.9
Duzib205G1605 Durio zibethinus HOM05D001445 ORTHO05D001261 4.0e-06 55.8 153 27.5
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 5.2e-06 55.5 157 31.8
Aqoxy7G04181 Aquilegia oxysepala HOM05D001445 ORTHO05D003404 6.8e-06 55.1 176 27.8
Cpa.g.sc9.27 Carica papaya HOM05D001578 ORTHO05D001207 6.8e-06 55.1 149 29.5
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 6.8e-06 55.1 149 29.5
Cpa.g.sc29.3 Carica papaya HOM05D001445 ORTHO05D001261 8.8e-06 54.7 172 27.3


User provided reference genes

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