Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 1.8e-245 852.0 409 100.0
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 1.7e-219 765.8 390 92.3
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 6.1e-209 730.7 390 88.7
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 5.4e-205 717.6 390 87.2
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 4.9e-198 694.5 393 83.5
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 6.8e-192 674.1 396 80.6
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 2.0e-191 672.5 395 81.3
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 8.3e-190 667.2 393 80.9
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 1.9e-189 666.0 392 80.1
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 8.6e-187 657.1 392 79.1
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 1.5e-186 656.4 386 80.8
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 1.5e-186 656.4 386 80.8
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 3.3e-186 655.2 394 79.4
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 5.2e-184 647.9 385 79.5
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 1.1e-173 613.6 390 73.8
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 1.1e-170 603.6 393 72.8
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 2.5e-170 602.4 385 71.7
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 4.3e-170 601.7 387 70.0
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 9.6e-170 600.5 391 70.8
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 4.7e-169 598.2 384 71.9
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 1.8e-168 596.3 384 72.7
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 4.0e-168 595.1 384 72.1
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 6.9e-168 594.3 384 71.6
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 2.9e-166 589.0 385 71.4
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 1.9e-165 586.3 424 67.7
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.4e-165 585.9 386 70.5
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 1.6e-161 573.2 392 69.9
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 1.6e-161 573.2 388 68.0
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 6.2e-161 571.2 378 70.9
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 2.4e-160 569.3 392 67.3
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 3.1e-160 568.9 393 68.7
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 4.0e-160 568.5 391 68.0
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 5.8e-159 564.7 409 66.5
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 9.9e-159 563.9 433 63.5
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 9.9e-159 563.9 376 68.4
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 1.3e-158 563.5 392 66.8
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 1.1e-157 560.5 391 67.8
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 5.4e-157 558.1 387 67.7
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 1.2e-156 557.0 389 68.1
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 2.3e-155 552.7 390 66.7
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 1.6e-153 546.6 394 66.2
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 2.8e-153 545.8 378 67.7
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 1.4e-152 543.5 391 65.5
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.8e-152 543.1 394 65.7
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 3.1e-152 542.3 392 66.1
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 5.3e-152 541.6 389 66.1
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 5.3e-152 541.6 341 72.1
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 1.2e-151 540.4 380 67.4
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 1.5e-151 540.0 397 67.3
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 3.4e-151 538.9 394 65.5
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 7.6e-151 537.7 337 73.6
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 2.2e-150 536.2 392 65.6
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 2.9e-150 535.8 392 64.8
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 3.8e-150 535.4 386 66.3
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 8.4e-150 534.3 398 66.1
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 3.2e-149 532.3 420 62.4
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 5.5e-149 531.6 392 65.3
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 7.1e-149 531.2 392 64.5
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 2.1e-148 529.6 399 63.9
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 4.6e-148 528.5 394 66.2
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 4.6e-148 528.5 387 64.3
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 7.9e-148 527.7 445 58.0
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 3.0e-147 525.8 385 65.2
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.5e-146 523.5 393 65.1
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 8.2e-145 517.7 392 64.8
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 4.0e-144 515.4 393 63.4
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 6.9e-144 514.6 373 64.3
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 1.5e-143 513.5 390 64.4
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 2.0e-143 513.1 396 63.9
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 3.4e-143 512.3 386 61.7
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 2.9e-142 509.2 392 62.5
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 3.8e-142 508.8 395 62.0
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 4.9e-142 508.4 398 63.8
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 6.5e-142 508.1 395 62.5
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 9.3e-141 504.2 394 63.7
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 1.3e-139 500.4 384 60.4
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.8e-139 500.0 390 62.6
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 5.7e-138 495.0 395 61.3
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 9.7e-138 494.2 401 61.6
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 1.3e-137 493.8 390 62.1
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 4.8e-137 491.9 410 59.8
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 1.1e-136 490.7 389 61.4
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 4.1e-136 488.8 319 70.5
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 9.0e-136 487.6 387 59.9
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 2.0e-135 486.5 390 59.5
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 1.3e-134 483.8 394 60.4
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 5.0e-134 481.9 397 57.9
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 5.5e-133 478.4 394 60.2
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 1.6e-132 476.9 391 59.6
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 2.1e-132 476.5 389 62.0
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 2.1e-132 476.5 346 63.3
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 3.6e-132 475.7 390 61.8
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 6.1e-132 474.9 390 61.8
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 6.1e-132 474.9 385 60.0
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.0e-131 474.2 385 60.0
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 8.8e-131 471.1 391 61.6
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 8.8e-131 471.1 391 58.3
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 5.7e-130 468.4 388 60.8
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 2.2e-129 466.5 370 58.9
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 3.1e-128 462.6 385 59.7
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 1.5e-127 460.3 429 54.5
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 2.2e-126 456.4 441 53.3
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 1.8e-123 446.8 403 54.6
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 9.7e-122 441.0 404 55.7
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 7.0e-120 434.9 342 62.3
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 6.1e-116 421.8 303 64.7
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 6.3e-113 411.8 233 83.7
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 8.3e-105 384.8 261 69.7
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 3.8e-102 375.9 276 67.4
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 1.3e-89 334.3 280 59.3
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 2.4e-88 330.1 383 44.4
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 3.2e-88 329.7 379 45.4
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 4.5e-87 325.9 350 46.3
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 1.3e-86 324.3 383 43.9
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 8.6e-78 295.0 228 58.8
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 1.2e-76 291.2 202 67.3
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 4.1e-72 276.2 301 46.2
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 5.1e-70 269.2 313 46.3
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 6.8e-67 258.8 203 56.7
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 2.0e-66 257.3 172 72.7
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 2.5e-61 240.4 233 48.1
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 1.3e-54 218.0 154 63.0
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 5.6e-53 212.6 188 55.3
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 7.3e-53 212.2 360 35.0
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 1.5e-42 177.9 132 68.2
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 4.2e-40 169.9 121 67.8
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 5.1e-38 162.9 344 33.1
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 2.6e-34 150.6 331 31.1
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 7.4e-29 132.5 148 43.9
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.5e-26 124.8 177 41.8
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 8.5e-17 92.4 170 32.9
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-14 83.6 137 35.0
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-11 74.7 69 46.4
Prupe.8G259600 Prunus persica HOM05D005667 ORTHO05D007299 3.8e-09 67.0 38 81.6
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.6e-07 61.6 219 27.4
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 2.1e-07 61.2 78 48.7
Gohir.A09G084900 Gossypium hirsutum HOM05D004669 ORTHO05D005767 2.7e-07 60.8 217 24.0
FAN02G3057 Fragaria x ananassa HOM05D004669 ORTHO05D005767 3.6e-07 60.5 205 23.4
Hma1.2p1_0531F.1_g173340 Hydrangea macrophylla HOM05D000684 ORTHO05D000688 3.6e-07 60.5 148 29.7
RcHm_v2.0_Chr2g0136751 Rosa chinensis HOM05D004669 ORTHO05D005767 3.6e-07 60.5 205 23.4
FAN05G0230 Fragaria x ananassa HOM05D004669 ORTHO05D005767 4.7e-07 60.1 205 23.4
FAN14G3011 Fragaria x ananassa HOM05D004669 ORTHO05D005767 4.7e-07 60.1 205 23.4
Gohir.D09G084800 Gossypium hirsutum HOM05D004669 ORTHO05D005767 4.7e-07 60.1 217 24.0
Gorai.006G100800 Gossypium raimondii HOM05D004669 ORTHO05D005767 4.7e-07 60.1 217 24.0
FvH4_6g30400 Fragaria vesca HOM05D004669 ORTHO05D005767 6.1e-07 59.7 205 22.9
FAN09G4623 Fragaria x ananassa HOM05D004669 ORTHO05D005767 6.1e-07 59.7 205 23.4
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 7.9e-07 59.3 170 26.5
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 7.9e-07 59.3 170 26.5
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 7.9e-07 59.3 170 25.9
AL1G27560 Arabidopsis lyrata HOM05D004669 ORTHO05D005767 1.4e-06 58.5 170 25.9
BcaC07g38791 Brassica carinata HOM05D004669 ORTHO05D005767 1.4e-06 58.5 168 26.8
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 1.4e-06 58.5 170 25.9
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 1.4e-06 58.5 170 25.9
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 1.4e-06 58.5 170 25.9
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 1.4e-06 58.5 170 25.9
BcaB03g13059 Brassica carinata HOM05D004669 ORTHO05D005767 1.8e-06 58.2 170 25.9
A08p31560 Brassica napus HOM05D004669 ORTHO05D005767 1.8e-06 58.2 170 25.9
BraA08t35078Z Brassica rapa HOM05D004669 ORTHO05D005767 1.8e-06 58.2 170 25.9
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 1.8e-06 58.2 170 25.3
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 1.8e-06 58.2 205 24.4
TPR.G37778 Trifolium pratense HOM05D004669 ORTHO05D005767 1.8e-06 58.2 169 28.4
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 2.3e-06 57.8 171 26.9
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 2.3e-06 57.8 171 26.9
Manes.11G052400 Manihot esculenta HOM05D004669 ORTHO05D005767 2.3e-06 57.8 171 26.9
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 2.3e-06 57.8 205 24.9
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 2.3e-06 57.8 205 24.9
Aa31LG7G190 Aethionema arabicum HOM05D004669 ORTHO05D005767 3.0e-06 57.4 170 24.7
CSS0005601 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 3.0e-06 57.4 158 23.4
Carub.0001s1524 Capsella rubella HOM05D004669 ORTHO05D005767 3.0e-06 57.4 170 25.3
ClCG06G013830 Citrullus lanatus HOM05D004669 ORTHO05D005767 3.0e-06 57.4 171 26.3
ClCG07G012820 Citrullus lanatus HOM05D004669 ORTHO05D005767 3.0e-06 57.4 171 26.3
MELO3C017903.2 Cucumis melo HOM05D004669 ORTHO05D005767 3.0e-06 57.4 171 26.3
CsaV3_4G001370 Cucumis sativus L. HOM05D004669 ORTHO05D005767 3.0e-06 57.4 171 26.3
Ah.08g209920 Amaranthus hybridus HOM05D004669 ORTHO05D005767 3.9e-06 57.0 171 25.1
AUR62011570 Chenopodium quinoa HOM05D004669 ORTHO05D005767 6.7e-06 56.2 171 25.7
AUR62016387 Chenopodium quinoa HOM05D004669 ORTHO05D005767 6.7e-06 56.2 171 25.7
Potri.003G060500 Populus trichocarpa HOM05D004669 ORTHO05D005767 6.7e-06 56.2 171 26.3
Zm00001eb293800 Zea mays HOM05D004669 ORTHO05D005767 6.7e-06 56.2 205 24.9
Lalb_Chr11g0073441 Lupinus albus HOM05D004669 ORTHO05D005767 8.8e-06 55.8 169 26.6
Sed0027531 Sechium edule HOM05D004669 ORTHO05D005767 8.8e-06 55.8 171 26.3


User provided reference genes

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