Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 6.7e-57 223.8 112 100.0
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 4.4e-16 88.2 61 78.7
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 4.1e-14 81.6 53 81.1
Medtr7g108610 Medicago truncatula HOM05D003821 ORTHO05D004449 2.0e-13 79.3 58 81.0
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 3.5e-13 78.6 65 69.2
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 1.3e-12 76.6 53 79.2
VMungo0251G2956 Vigna mungo HOM05D000069 ORTHO05D022756 1.7e-12 76.3 51 84.3
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 5.0e-12 74.7 61 70.5
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 8.5e-12 73.9 56 71.4
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.9e-11 72.8 50 74.0
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.9e-11 72.8 53 69.8
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 1.9e-11 72.8 49 75.5
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 1.9e-11 72.8 49 75.5
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.1e-10 69.3 67 58.2
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 2.7e-10 68.9 51 72.5
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.7e-10 68.9 51 66.7
MELO3C032813.2 Cucumis melo HOM05D003821 ORTHO05D004449 1.8e-09 66.2 60 61.7
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 1.8e-09 66.2 62 62.9
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.0e-09 65.1 53 62.3
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 4.0e-09 65.1 92 44.6
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 5.2e-09 64.7 62 61.3
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.8e-09 64.3 61 60.7
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 8.8e-09 63.9 49 65.3
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 1.2e-08 63.5 50 70.0
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.5e-08 63.2 62 59.7
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 2.0e-08 62.8 65 66.2
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 2.0e-08 62.8 48 70.8
COL.COLO4_23375 Corchorus olitorius HOM05D003821 ORTHO05D004449 2.6e-08 62.4 44 68.2
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 3.4e-08 62.0 78 51.3
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 3.4e-08 62.0 56 71.4
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 5.7e-08 61.2 49 63.3
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 7.5e-08 60.8 53 62.3
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 7.5e-08 60.8 52 61.5
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.3e-07 60.1 49 63.3
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.7e-07 59.7 49 63.3
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 1.7e-07 59.7 68 52.9
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.7e-07 59.7 40 75.0
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.7e-07 59.7 69 47.8
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.8e-07 58.9 49 59.2
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 3.7e-07 58.5 49 61.2
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.7e-07 58.5 48 58.3
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 3.7e-07 58.5 68 51.5
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 3.7e-07 58.5 48 62.5
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 4.8e-07 58.2 49 61.2
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 4.8e-07 58.2 49 65.3
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 4.8e-07 58.2 48 62.5
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 6.3e-07 57.8 54 57.4
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 8.3e-07 57.4 44 63.6
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 8.3e-07 57.4 49 59.2
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 1.4e-06 56.6 59 57.6
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 1.4e-06 56.6 42 66.7
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.4e-06 56.6 51 56.9
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 2.4e-06 55.8 54 55.6
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 3.1e-06 55.5 42 69.0
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 3.1e-06 55.5 68 55.9
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 3.1e-06 55.5 48 64.6
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.1e-06 55.1 49 57.1
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 5.4e-06 54.7 49 57.1
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 5.4e-06 54.7 48 58.3
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 7.0e-06 54.3 39 66.7
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 7.0e-06 54.3 48 60.4
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 7.0e-06 54.3 51 52.9
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 7.0e-06 54.3 49 57.1
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 7.0e-06 54.3 42 61.9
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 9.1e-06 53.9 49 55.1
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 9.1e-06 53.9 49 55.1
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 9.1e-06 53.9 34 73.5
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 9.1e-06 53.9 42 64.3
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 9.1e-06 53.9 49 53.1


User provided reference genes

Program Settings