Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G210600 Glycine max HOM05D007654 ORTHO05D009697 1.9e-40 168.7 85 100.0
Glyma.19G207800 Glycine max HOM05D007654 ORTHO05D009697 3.4e-37 157.9 84 94.0
Phvul.001G203700 Phaseolus vulgaris HOM05D007654 ORTHO05D009697 1.0e-33 146.4 81 90.1
TPR.G9273 Trifolium pratense HOM05D007654 ORTHO05D009697 2.0e-29 132.1 80 80.0
Lj1g0000519 Lotus japonicus HOM05D007654 ORTHO05D009697 2.6e-29 131.7 80 80.0
Lalb_Chr15g0078691 Lupinus albus HOM05D007654 ORTHO05D009697 1.7e-28 129.0 74 83.8
arahy.Tifrunner.gnm1.ann1.4942C7 Arachis hypogaea HOM05D007654 ORTHO05D009697 2.4e-27 125.2 74 83.8
Medtr7g108290 Medicago truncatula HOM05D000091 ORTHO05D003679 2.4e-27 125.2 83 73.5
QL12p024465 Quercus lobata HOM05D007654 ORTHO05D009697 6.7e-25 117.1 81 69.1
Prupe.8G254700 Prunus persica HOM05D007654 ORTHO05D009697 1.1e-24 116.3 71 80.3
Gohir.D12G009200 Gossypium hirsutum HOM05D007654 ORTHO05D009697 1.5e-24 115.9 81 70.4
Gorai.008G009300 Gossypium raimondii HOM05D007654 ORTHO05D009697 1.5e-24 115.9 81 70.4
Manes.01G215200 Manihot esculenta HOM05D007654 ORTHO05D009697 1.5e-24 115.9 83 66.3
Gohir.A12G009300 Gossypium hirsutum HOM05D007654 ORTHO05D009697 1.9e-24 115.5 81 70.4
COL.COLO4_08007 Corchorus olitorius HOM05D000091 ORTHO05D003679 3.3e-24 114.8 80 71.2
Duzib138G0105 Durio zibethinus HOM05D007654 ORTHO05D009697 3.3e-24 114.8 82 68.3
Manes.05G066600 Manihot esculenta HOM05D007654 ORTHO05D009697 3.3e-24 114.8 84 64.3
CSS0025949 Camellia sinensis var. sinensis HOM05D007654 ORTHO05D009697 4.3e-24 114.4 81 69.1
Ca_09124_v3 Cicer arietinum L. HOM05D000091 ORTHO05D003679 5.6e-24 114.0 66 83.3
Hma1.2p1_0209F.1_g088920 Hydrangea macrophylla HOM05D007654 ORTHO05D009697 2.8e-23 111.7 80 70.0
Lsat_1_v5_gn_8_54301 Lactuca sativa HOM05D007654 ORTHO05D009697 6.2e-23 110.5 81 67.9
Cfa005999 Carpinus fangiana HOM05D007654 ORTHO05D009697 8.2e-23 110.2 81 69.1
Potri.014G133600 Populus trichocarpa HOM05D007654 ORTHO05D009697 8.2e-23 110.2 80 66.2
MD11G1300800 Malus domestica HOM05D007654 ORTHO05D009697 1.4e-22 109.4 72 73.6
Nn3g21360 Nelumbo nucifera HOM05D007654 ORTHO05D009697 1.8e-22 109.0 78 67.9
GSVIVG01010984001 Vitis vinifera HOM05D007654 ORTHO05D009697 3.1e-22 108.2 81 65.4
Atru.chr5.1253 Acer truncatum HOM05D007654 ORTHO05D009697 4.0e-22 107.8 81 64.2
FAN27G0435 Fragaria x ananassa HOM05D000091 ORTHO05D003679 4.0e-22 107.8 80 68.8
Lsat_1_v5_gn_9_47321 Lactuca sativa HOM05D007654 ORTHO05D009697 6.9e-22 107.1 81 65.4
HanXRQChr11g0350121 Helianthus annuus HOM05D007654 ORTHO05D009697 9.0e-22 106.7 82 65.9
Dinv33011 Davidia involucrata HOM05D007654 ORTHO05D009697 1.2e-21 106.3 80 65.0
Thecc.01G292900 Theobroma cacao HOM05D007654 ORTHO05D009697 1.2e-21 106.3 81 66.7
FAN15G1923 Fragaria x ananassa HOM05D000091 ORTHO05D003679 1.5e-21 105.9 80 67.5
PGR119G1851 Punica granatum HOM05D007654 ORTHO05D009697 2.0e-21 105.5 82 64.6
FAN24G2398 Fragaria x ananassa HOM05D000091 ORTHO05D003679 3.4e-21 104.8 80 67.5
CiPaw.07G102300 Carya illinoinensis HOM05D007654 ORTHO05D009697 4.5e-21 104.4 82 64.6
ECA236G4373 Erigeron canadensis HOM05D007654 ORTHO05D009697 5.8e-21 104.0 71 69.0
RcHm_v2.0_Chr6g0292931 Rosa chinensis HOM05D007654 ORTHO05D009697 7.6e-21 103.6 70 70.0
Ciclev10023123m.g Citrus clementina HOM05D007654 ORTHO05D009697 1.0e-20 103.2 80 62.5
arahy.Tifrunner.gnm1.ann1.3EGQ08 Arachis hypogaea HOM05D007654 ORTHO05D009697 1.7e-20 102.4 69 73.9
Aa31LG10G16730 Aethionema arabicum HOM05D007654 ORTHO05D009697 2.2e-20 102.1 79 63.3
Carub.0005s2957 Capsella rubella HOM05D007654 ORTHO05D009697 2.2e-20 102.1 79 63.3
TWI59G0903 Tripterygium wilfordii HOM05D007654 ORTHO05D009697 2.2e-20 102.1 81 63.0
MD03G1278400 Malus domestica HOM05D007654 ORTHO05D009697 3.8e-20 101.3 72 68.1
Solyc09g074620.3 Solanum lycopersicum HOM05D007654 ORTHO05D009697 4.9e-20 100.9 80 58.8
Sopen09g029490 Solanum pennellii HOM05D007654 ORTHO05D009697 4.9e-20 100.9 80 58.8
AL5G45700 Arabidopsis lyrata HOM05D007654 ORTHO05D009697 6.5e-20 100.5 79 60.8
CANSAT25G3801 Cannabis sativa HOM05D007654 ORTHO05D009697 8.4e-20 100.1 81 64.2
Haze_04848 Corylus avellana HOM05D007654 ORTHO05D009697 8.4e-20 100.1 110 52.7
TAR636G0595 Trochodendron aralioides HOM05D007654 ORTHO05D009697 8.4e-20 100.1 82 56.1
CsaV3_7G028850 Cucumis sativus L. HOM05D007654 ORTHO05D009697 1.4e-19 99.4 79 58.2
Migut.D00166 Erythranthe guttata HOM05D007654 ORTHO05D009697 1.9e-19 99.0 80 60.0
Aqoxy2G03067 Aquilegia oxysepala HOM05D007654 ORTHO05D009697 2.5e-19 98.6 81 56.8
Cc01_g20410 Coffea canephora HOM05D007654 ORTHO05D009697 2.5e-19 98.6 80 60.0
PSO170G3373 Papaver somniferum HOM05D007654 ORTHO05D009697 2.5e-19 98.6 80 60.0
vmacro14977 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 2.5e-19 98.6 70 67.1
AT3G62920 Arabidopsis thaliana HOM05D007654 ORTHO05D009697 4.2e-19 97.8 79 59.5
PGSC0003DMG400011382 Solanum tuberosum HOM05D007654 ORTHO05D009697 4.2e-19 97.8 80 57.5
CARHR173210 Cardamine hirsuta HOM05D007654 ORTHO05D009697 5.5e-19 97.4 78 61.5
MELO3C016052.2 Cucumis melo HOM05D007654 ORTHO05D009697 9.3e-19 96.7 70 62.9
Thhalv10006348m.g Eutrema salsugineum HOM05D007654 ORTHO05D009697 9.3e-19 96.7 79 59.5
BraA09t40886Z Brassica rapa HOM05D007654 ORTHO05D009697 1.2e-18 96.3 80 60.0
Nitab4.5_0002006g0110 Nicotiana tabacum HOM05D007654 ORTHO05D009697 2.1e-18 95.5 81 58.0
BolC8t51346H Brassica oleracea HOM05D007654 ORTHO05D009697 2.7e-18 95.1 78 60.3
SalBow3G4040 Salvia bowleyana HOM05D007654 ORTHO05D009697 2.7e-18 95.1 78 57.7
A09p54770 Brassica napus HOM05D007654 ORTHO05D009697 4.6e-18 94.4 80 58.8
C08p37630 Brassica napus HOM05D007654 ORTHO05D009697 4.6e-18 94.4 78 60.3
Cpa.g.sc9.182 Carica papaya HOM05D007654 ORTHO05D009697 6.0e-18 94.0 66 69.7
ClCG09G006300 Citrullus lanatus HOM05D007654 ORTHO05D009697 6.0e-18 94.0 75 56.0
Eucgr.H01198 Eucalyptus grandis HOM05D007654 ORTHO05D009697 6.0e-18 94.0 77 61.0
Sed0025850 Sechium edule HOM05D007654 ORTHO05D009697 7.9e-18 93.6 77 57.1
FvH4_2g24970 Fragaria vesca HOM05D007654 ORTHO05D009697 1.8e-17 92.4 67 70.1
arahy.Tifrunner.gnm1.ann1.559R1C Arachis hypogaea HOM05D007654 ORTHO05D009697 6.7e-17 90.5 55 81.8
MBI18_g01968_MAGBIO Magnolia biondii HOM05D007654 ORTHO05D009697 1.1e-16 89.7 66 62.1
Rhsim01G0281900 Rhododendron simsii HOM05D007654 ORTHO05D009697 1.9e-16 89.0 81 58.0
Hund18071 Selenicereus undatus HOM05D007654 ORTHO05D009697 2.5e-16 88.6 74 58.1
Actinidia21074 Actinidia chinensis HOM05D007654 ORTHO05D009697 3.3e-16 88.2 53 75.5
unitig_0.g650 Utricularia gibba HOM05D007654 ORTHO05D009697 3.3e-16 88.2 69 60.9
AUR62034665 Chenopodium quinoa HOM05D007654 ORTHO05D009697 4.3e-16 87.8 78 53.8
BcaB02g08089 Brassica carinata HOM05D007654 ORTHO05D009697 9.7e-16 86.7 78 53.8
Oeu057570.1 Olea europaea HOM05D007654 ORTHO05D009697 1.3e-15 86.3 65 60.0
Dinv19737 Davidia involucrata HOM05D007654 ORTHO05D009697 1.1e-14 83.2 55 74.5
FAN20G1580 Fragaria x ananassa HOM05D007654 ORTHO05D009697 1.1e-14 83.2 64 68.8
A04p00450 Brassica napus HOM05D007654 ORTHO05D009697 2.4e-14 82.0 79 53.2
BraA04t15764Z Brassica rapa HOM05D007654 ORTHO05D009697 2.4e-14 82.0 79 53.2
Sabra14G0099700 Salix brachista HOM05D000091 ORTHO05D003679 2.4e-14 82.0 78 59.0
EL10Ac7g17424 Beta vulgaris HOM05D007654 ORTHO05D009697 4.1e-14 81.3 70 55.7
C04p30320 Brassica napus HOM05D007654 ORTHO05D009697 5.3e-14 80.9 60 63.3
BolC4t24565H Brassica oleracea HOM05D007654 ORTHO05D009697 5.3e-14 80.9 60 63.3
Eucgr.L03487 Eucalyptus grandis HOM05D007654 ORTHO05D009697 9.0e-14 80.1 77 55.8
Actinidia21070 Actinidia chinensis HOM05D007654 ORTHO05D009697 1.5e-13 79.3 50 74.0
Nitab4.5_0001102g0070 Nicotiana tabacum HOM05D007654 ORTHO05D009697 7.7e-13 77.0 61 63.9
Zm00001eb365450 Zea mays HOM05D007654 ORTHO05D009697 2.2e-12 75.5 54 66.7
AUR62008575 Chenopodium quinoa HOM05D000096 ORTHO05D000045 8.5e-12 73.6 61 57.4
vmacro14982 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 1.9e-11 72.4 48 68.8
Lsat_1_v5_gn_0_9401 Lactuca sativa HOM05D007654 ORTHO05D009697 2.5e-11 72.0 57 59.6
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 4.2e-11 71.2 61 54.1
Os05g0371500 Oryza sativa ssp. japonica HOM05D007654 ORTHO05D009697 1.4e-09 66.2 50 58.0
SEGI_14019 Sequoiadendron giganteum HOM05D007654 ORTHO05D009697 1.1e-08 63.2 46 56.5
Mapoly0101s0010 Marchantia polymorpha HOM05D007654 ORTHO05D009697 3.7e-07 58.2 53 49.1
AagrBONN_evm.TU.Sc2ySwM_344.4968 Anthoceros agrestis HOM05D007654 ORTHO05D009697 2.4e-06 55.5 48 45.8


User provided reference genes

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