Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 2174.1 1127 100.0
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1919.8 1143 87.7
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1866.3 1143 85.5
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1748.0 1134 80.5
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1713.7 1138 78.8
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1709.5 1136 79.2
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1691.0 1120 79.5
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1688.3 1140 78.9
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1627.1 1146 74.7
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1585.1 1147 73.9
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1580.5 1150 72.6
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1573.9 1154 72.8
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1570.4 1132 74.5
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1568.9 1144 74.0
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1533.5 1147 70.9
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1521.1 1130 70.2
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1519.2 1111 71.5
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1512.3 1127 70.6
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1509.2 1101 70.9
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1508.8 1120 70.9
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1498.4 1010 76.5
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1495.3 1086 71.8
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1493.0 1130 70.0
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1489.2 1101 69.1
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1487.6 1143 69.2
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1486.9 1130 68.8
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1485.3 1076 71.5
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1485.3 1083 70.5
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1484.5 1127 70.5
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1479.9 1106 68.6
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1478.0 1094 71.3
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1469.9 1106 68.3
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1465.3 1119 68.7
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1463.7 1149 68.8
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1456.4 1129 68.6
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1455.3 1088 71.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1451.0 1002 75.1
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1436.8 1076 70.4
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1428.7 1110 67.2
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1418.7 1144 67.3
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1401.3 1220 63.3
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1397.5 1156 65.0
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1397.5 1122 66.5
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1397.5 1265 61.5
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1396.7 1121 66.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1392.5 1125 66.0
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1388.2 1125 66.1
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1383.6 1122 66.0
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1372.1 1171 62.8
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1362.4 1110 64.7
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1355.1 1120 65.3
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1354.0 1147 64.8
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1353.2 1168 62.7
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1347.4 1127 62.6
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1347.4 1114 63.7
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1347.0 1125 62.6
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1346.3 1111 62.9
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1342.4 1107 64.0
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1340.1 1058 67.3
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1339.7 1110 62.6
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1339.3 1117 65.5
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1336.2 1041 67.5
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1335.9 1052 64.8
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1335.1 1150 61.0
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1331.2 1128 62.1
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1325.8 1140 64.1
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1325.8 1114 62.9
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1320.8 1047 64.0
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1316.2 1106 63.3
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1311.6 1115 62.7
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1307.7 1042 63.7
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1307.0 1099 62.6
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1306.2 1087 62.8
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1299.3 1121 61.7
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1299.3 1130 61.1
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1299.3 1128 62.7
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1295.0 1090 61.5
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1295.0 1108 60.9
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1292.7 1042 63.2
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1291.6 1151 59.8
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1290.4 1080 61.6
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1287.7 1118 61.6
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1282.7 1069 63.8
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1281.9 1102 60.7
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1280.4 1085 61.3
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1271.9 1076 61.5
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1269.6 1078 61.5
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1261.5 1088 60.9
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1258.4 1072 60.9
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1258.0 1074 60.8
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1257.3 917 70.6
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1254.2 1133 60.2
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1241.9 1378 51.2
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1231.9 1078 60.3
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1219.9 1060 59.4
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1215.3 1100 59.4
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1205.3 1093 57.7
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1198.3 973 62.3
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1157.5 1122 55.3
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1155.2 1026 57.3
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1147.5 905 64.8
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1140.9 883 69.4
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1097.4 1084 56.3
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 9.3e-311 1070.5 822 68.5
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 3.2e-308 1062.0 1076 54.9
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.1e-305 1053.5 951 57.9
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.6e-302 1042.3 1133 52.9
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.6e-299 1033.1 676 76.2
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 9.1e-287 990.7 1077 49.7
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 1.0e-274 950.7 784 63.8
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 7.7e-270 934.5 964 49.8
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.9e-268 929.9 1065 46.9
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 8.8e-258 894.4 1011 48.2
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 2.6e-257 892.9 663 72.1
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.4e-217 759.6 546 71.6
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.4e-217 759.6 546 71.6
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.4e-217 759.2 580 69.7
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 5.8e-209 732.3 1036 40.7
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.6e-158 564.7 352 81.2
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 2.8e-118 431.0 402 61.9
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 6.9e-61 240.4 201 58.2
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 3.9e-56 224.6 709 27.1
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 4.8e-54 217.6 165 65.5
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 5.0e-51 207.6 138 72.5
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.5e-47 196.1 208 52.9
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 1.3e-46 193.0 172 57.0
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.0e-40 173.3 174 54.0
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 5.2e-40 171.0 174 54.0
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 3.3e-39 168.3 216 46.3
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 7.7e-36 157.1 619 23.6
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 5.0e-35 154.5 723 23.4
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 1.4e-29 136.3 150 50.0
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 9.1e-29 133.7 121 56.2
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 9.4e-26 123.6 97 67.0
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 2.4e-21 109.0 302 32.8
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.8e-16 92.8 107 44.9
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 2.3e-16 92.4 305 26.2
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.7e-14 85.1 82 69.5
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 3.7e-14 85.1 70 61.4
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 3.0e-11 75.5 68 60.3
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 5.0e-11 74.7 91 52.7
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.5e-07 63.2 50 48.0
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 7.5e-07 60.8 79 44.3
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.7e-06 59.7 115 33.0
COL.COLO4_03377 Corchorus olitorius HOM05D004682 ORTHO05D006197 4.9e-06 58.2 89 51.7
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 4.9e-06 58.2 48 58.3


User provided reference genes

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