Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G204900 Glycine max HOM05D001186 ORTHO05D000971 6.2e-61 237.3 120 100.0
Glyma.19G202300 Glycine max HOM05D001186 ORTHO05D000971 2.8e-45 185.3 124 80.6
CiPaw.10G021400 Carya illinoinensis HOM05D001186 ORTHO05D000971 4.8e-13 78.2 100 47.0
Manes.08G037400 Manihot esculenta HOM05D001186 ORTHO05D000971 3.1e-12 75.5 64 57.8
QL06p036159 Quercus lobata HOM05D001186 ORTHO05D000971 3.1e-12 75.5 75 54.7
QL07p026339 Quercus lobata HOM05D001186 ORTHO05D000971 3.1e-12 75.5 75 54.7
FAN05G4110 Fragaria x ananassa HOM05D001186 ORTHO05D000971 5.9e-11 71.2 64 59.4
Cfa020066 Carpinus fangiana HOM05D001186 ORTHO05D043666 7.7e-11 70.9 68 57.4
Thecc.05G110300 Theobroma cacao HOM05D001186 ORTHO05D000971 7.7e-11 70.9 86 43.0
ClCG10G017960 Citrullus lanatus HOM05D001186 ORTHO05D000971 1.0e-10 70.5 95 42.1
FAN02G0442 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.3e-10 69.3 64 57.8
Lsat_1_v5_gn_6_34220 Lactuca sativa HOM05D001186 ORTHO05D000971 2.3e-10 69.3 76 52.6
CiPaw.09G024300 Carya illinoinensis HOM05D001186 ORTHO05D000971 2.9e-10 68.9 98 45.9
FAN05G1048 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.9e-10 68.9 64 57.8
Haze_20128 Corylus avellana HOM05D001186 ORTHO05D000971 3.8e-10 68.6 66 54.5
FvH4_6g21030 Fragaria vesca HOM05D001186 ORTHO05D000971 3.8e-10 68.6 64 56.2
FAN14G0712 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.8e-10 68.6 64 56.2
FAN09G1764 Fragaria x ananassa HOM05D004834 ORTHO05D006247 5.0e-10 68.2 66 57.6
Sed0025511 Sechium edule HOM05D001186 ORTHO05D000971 6.6e-10 67.8 67 49.3
TAR369G0643 Trochodendron aralioides HOM05D001186 ORTHO05D000971 8.6e-10 67.4 88 43.2
Ciclev10013749m.g Citrus clementina HOM05D001186 ORTHO05D000971 1.5e-09 66.6 70 52.9
CsaV3_3G038330 Cucumis sativus L. HOM05D001186 ORTHO05D000971 1.5e-09 66.6 108 38.0
Potri.006G199300 Populus trichocarpa HOM05D001186 ORTHO05D000971 2.5e-09 65.9 63 54.0
Cfa020067 Carpinus fangiana HOM05D001186 ORTHO05D000971 7.2e-09 64.3 100 37.0
Duzib128G1674 Durio zibethinus HOM05D001186 ORTHO05D000971 7.2e-09 64.3 74 48.6
Sabra06G0153200 Salix brachista HOM05D001186 ORTHO05D000971 7.2e-09 64.3 59 55.9
TAR623G0067 Trochodendron aralioides HOM05D001186 ORTHO05D000971 9.5e-09 63.9 74 40.5
HPP92_000062 Vanilla planifolia HOM05D001186 ORTHO05D000971 9.5e-09 63.9 79 48.1
Sed0014716 Sechium edule HOM05D001186 ORTHO05D000971 1.6e-08 63.2 65 55.4
MELO3C009575.2 Cucumis melo HOM05D001186 ORTHO05D000971 2.1e-08 62.8 98 38.8
Duzib093G1110 Durio zibethinus HOM05D001186 ORTHO05D000971 2.8e-08 62.4 82 45.1
COL.COLO4_29493 Corchorus olitorius HOM05D001186 ORTHO05D000971 3.6e-08 62.0 70 48.6
Duzib093G1352 Durio zibethinus HOM05D001186 ORTHO05D000971 8.0e-08 60.8 100 39.0
Medtr1g028920 Medicago truncatula HOM05D001186 ORTHO05D000971 8.0e-08 60.8 69 50.7
Oeu037616.1 Olea europaea HOM05D001186 ORTHO05D000971 8.0e-08 60.8 78 46.2
Sed0010828 Sechium edule HOM05D001186 ORTHO05D000971 8.0e-08 60.8 64 48.4
COL.COLO4_36019 Corchorus olitorius HOM05D001186 ORTHO05D000971 1.0e-07 60.5 101 38.6
Gorai.002G154000 Gossypium raimondii HOM05D001186 ORTHO05D000971 1.0e-07 60.5 69 47.8
SalBow7G3795 Salvia bowleyana HOM05D001186 ORTHO05D000971 1.0e-07 60.5 67 49.3
Eucgr.A02544 Eucalyptus grandis HOM05D001186 ORTHO05D000971 1.8e-07 59.7 81 45.7
Lsat_1_v5_gn_1_8801 Lactuca sativa HOM05D001186 ORTHO05D000971 1.8e-07 59.7 87 42.5
TPR.G33348 Trifolium pratense HOM05D000033 ORTHO05D001999 1.8e-07 59.7 93 39.8
Atru.chr8.1283 Acer truncatum HOM05D001186 ORTHO05D000971 2.3e-07 59.3 67 46.3
Gohir.D01G189650 Gossypium hirsutum HOM05D001186 ORTHO05D000971 2.3e-07 59.3 69 43.5
Gohir.D07G211466 Gossypium hirsutum HOM05D001186 ORTHO05D000971 2.3e-07 59.3 69 43.5
Gorai.002G233400 Gossypium raimondii HOM05D001186 ORTHO05D000971 2.3e-07 59.3 69 43.5
Lj2g0018313 Lotus japonicus HOM05D001186 ORTHO05D000971 2.3e-07 59.3 62 43.5
Medtr1g028910 Medicago truncatula HOM05D001186 ORTHO05D000971 2.3e-07 59.3 69 49.3
Nn2g14422 Nelumbo nucifera HOM05D001186 ORTHO05D000971 2.3e-07 59.3 80 41.2
Oeu032976.1 Olea europaea HOM05D001186 ORTHO05D000971 3.0e-07 58.9 70 47.1
Phvul.008G159700 Phaseolus vulgaris HOM05D001186 ORTHO05D000971 3.0e-07 58.9 104 40.4
CSS0038492 Camellia sinensis var. sinensis HOM05D001186 ORTHO05D000971 4.0e-07 58.5 71 45.1
PGSC0003DMG400017564 Solanum tuberosum HOM05D001186 ORTHO05D000971 4.0e-07 58.5 117 36.8
Actinidia15150 Actinidia chinensis HOM05D001186 ORTHO05D000971 5.2e-07 58.2 80 42.5
CANSAT64G0006 Cannabis sativa HOM05D001186 ORTHO05D000971 5.2e-07 58.2 58 55.2
CiPaw.15G019500 Carya illinoinensis HOM05D001186 ORTHO05D000971 6.8e-07 57.8 74 45.9
Duzib041G0538 Durio zibethinus HOM05D001186 ORTHO05D000971 6.8e-07 57.8 76 43.4
Gohir.A01G199550 Gossypium hirsutum HOM05D001186 ORTHO05D000971 6.8e-07 57.8 69 42.0
Gohir.D01G123101 Gossypium hirsutum HOM05D001186 ORTHO05D000971 6.8e-07 57.8 70 42.9
Aqoxy1G00584 Aquilegia oxysepala HOM05D001186 ORTHO05D000971 8.9e-07 57.4 74 40.5
FAN15G3153 Fragaria x ananassa HOM05D001186 ORTHO05D000971 8.9e-07 57.4 93 38.7
Lalb_Chr06g0166031 Lupinus albus HOM05D001186 ORTHO05D000971 8.9e-07 57.4 66 45.5
Nitab4.5_0006679g0010 Nicotiana tabacum HOM05D001186 ORTHO05D000971 8.9e-07 57.4 82 41.5
HPP92_011922 Vanilla planifolia HOM05D001186 ORTHO05D000971 8.9e-07 57.4 89 41.6
Glyma.13G039800 Glycine max HOM05D001186 ORTHO05D000971 1.2e-06 57.0 79 46.8
HanXRQChr02g0037451 Helianthus annuus HOM05D001186 ORTHO05D000971 1.2e-06 57.0 92 39.1
Peaxi162Scf00051g00055 Petunia axillaris HOM05D001186 ORTHO05D000971 1.2e-06 57.0 72 41.7
Sc20g0003400 Simmondsia chinensis HOM05D001186 ORTHO05D000971 1.2e-06 57.0 98 37.8
Zm00001eb259970 Zea mays HOM05D001186 ORTHO05D000971 1.2e-06 57.0 67 47.8
FAN20G2326 Fragaria x ananassa HOM05D001186 ORTHO05D000971 1.5e-06 56.6 80 41.2
HPP92_027454 Vanilla planifolia HOM05D001186 ORTHO05D000971 1.5e-06 56.6 86 41.9
CAN.G1664.1 Capsicum annuum HOM05D001186 ORTHO05D000971 2.0e-06 56.2 76 42.1
CsaV3_6G030890 Cucumis sativus L. HOM05D001186 ORTHO05D000971 2.0e-06 56.2 61 47.5
FvH4_2g14340 Fragaria vesca HOM05D001186 ORTHO05D000971 2.0e-06 56.2 79 41.8
FAN24G3322 Fragaria x ananassa HOM05D001186 ORTHO05D000971 2.0e-06 56.2 79 41.8
Glyma.14G124800 Glycine max HOM05D001186 ORTHO05D000971 2.6e-06 55.8 108 38.9
Duzib116G0881 Durio zibethinus HOM05D001186 ORTHO05D000971 3.4e-06 55.5 69 46.4
FAN23G1856 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.4e-06 55.5 77 42.9
FAN28G0084 Fragaria x ananassa HOM05D001186 ORTHO05D000971 3.4e-06 55.5 77 42.9
Glyma.04G239400 Glycine max HOM05D001186 ORTHO05D000971 3.4e-06 55.5 69 47.8
Potri.005G189300 Populus trichocarpa HOM05D001186 ORTHO05D000971 3.4e-06 55.5 100 35.0
Cfa018343 Carpinus fangiana HOM05D001186 ORTHO05D000971 4.4e-06 55.1 75 41.3
Haze_20129 Corylus avellana HOM05D001186 ORTHO05D000971 4.4e-06 55.1 66 50.0
Gohir.D03G070700 Gossypium hirsutum HOM05D001186 ORTHO05D000971 4.4e-06 55.1 98 35.7
Gorai.003G089500 Gossypium raimondii HOM05D001186 ORTHO05D000971 4.4e-06 55.1 98 35.7
Nitab4.5_0000427g0090 Nicotiana tabacum HOM05D001186 ORTHO05D000971 4.4e-06 55.1 71 45.1
Os02g0539500 Oryza sativa ssp. japonica HOM05D001186 ORTHO05D000971 4.4e-06 55.1 95 37.9
Sopen04g026910 Solanum pennellii HOM05D001186 ORTHO05D000971 4.4e-06 55.1 99 39.4
TAR628G0442 Trochodendron aralioides HOM05D001186 ORTHO05D000971 4.4e-06 55.1 62 48.4
VMungo1309G1275 Vigna mungo HOM05D001186 ORTHO05D000971 4.4e-06 55.1 67 46.3
CiPaw.16G016300 Carya illinoinensis HOM05D001186 ORTHO05D000971 5.7e-06 54.7 71 43.7
Eucgr.F02723 Eucalyptus grandis HOM05D001186 ORTHO05D000971 5.7e-06 54.7 76 44.7
FvH4_4g27220 Fragaria vesca HOM05D001186 ORTHO05D000971 5.7e-06 54.7 71 43.7
FAN12G0246 Fragaria x ananassa HOM05D001186 ORTHO05D000971 5.7e-06 54.7 71 43.7
FAN12G0708 Fragaria x ananassa HOM05D001186 ORTHO05D000971 5.7e-06 54.7 71 43.7
FAN22G0160 Fragaria x ananassa HOM05D001186 ORTHO05D000971 5.7e-06 54.7 71 43.7
FAN27G1120 Fragaria x ananassa HOM05D001186 ORTHO05D000971 5.7e-06 54.7 79 40.5
Glyma.06G124400 Glycine max HOM05D001186 ORTHO05D000971 5.7e-06 54.7 68 45.6
Glyma.10G273300 Glycine max HOM05D001186 ORTHO05D000971 5.7e-06 54.7 61 44.3
Gohir.A02G108503 Gossypium hirsutum HOM05D001186 ORTHO05D000971 5.7e-06 54.7 92 35.9
Lj1g0004766 Lotus japonicus HOM05D001186 ORTHO05D000971 5.7e-06 54.7 75 41.3
Nitab4.5_0000633g0120 Nicotiana tabacum HOM05D001186 ORTHO05D000971 5.7e-06 54.7 72 44.4
HPP92_001096 Vanilla planifolia HOM05D001186 ORTHO05D000971 5.7e-06 54.7 64 48.4
FAN07G0491 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.5e-06 54.3 71 43.7
FAN17G0570 Fragaria x ananassa HOM05D001186 ORTHO05D000971 7.5e-06 54.3 71 43.7
PSO210G1654 Papaver somniferum HOM05D001186 ORTHO05D000971 7.5e-06 54.3 94 34.0
Thecc.08G146900 Theobroma cacao HOM05D001186 ORTHO05D000971 7.5e-06 54.3 100 37.0
ClCG08G006550 Citrullus lanatus HOM05D001186 ORTHO05D000971 9.8e-06 53.9 61 49.2
DCAR_026737 Daucus carota HOM05D001186 ORTHO05D000971 9.8e-06 53.9 60 43.3
FAN26G1531 Fragaria x ananassa HOM05D001186 ORTHO05D000971 9.8e-06 53.9 77 41.6
Manes.02G176600 Manihot esculenta HOM05D001186 ORTHO05D000971 9.8e-06 53.9 102 36.3
Os08g0102900 Oryza sativa ssp. japonica HOM05D001186 ORTHO05D000971 9.8e-06 53.9 65 44.6
Prupe.8G022500 Prunus persica HOM05D001186 ORTHO05D000971 9.8e-06 53.9 75 44.0
Solyc06g060470.1 Solanum lycopersicum HOM05D001186 ORTHO05D000971 9.8e-06 53.9 106 34.0


User provided reference genes

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