Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G201700 Glycine max HOM05D007097 ORTHO05D008131 5.4e-110 401.0 200 100.0
Lalb_Chr01g0017871 Lupinus albus HOM05D007097 ORTHO05D008131 9.4e-54 214.2 229 55.5
Lalb_Chr25g0288011 Lupinus albus HOM05D007097 ORTHO05D008131 1.2e-53 213.8 230 54.3
Lalb_Chr20g0111401 Lupinus albus HOM05D007097 ORTHO05D008131 4.7e-53 211.8 217 55.3
VMungo0720G1866 Vigna mungo HOM05D007097 ORTHO05D008131 2.9e-39 166.0 229 45.4
Prupe.7G095200 Prunus persica HOM05D007097 ORTHO05D008131 1.6e-37 160.2 242 41.7
Glyma.10G081100 Glycine max HOM05D007097 ORTHO05D008131 2.8e-37 159.5 226 43.8
TWI74G0793 Tripterygium wilfordii HOM05D007097 ORTHO05D008131 6.1e-37 158.3 234 44.0
Gorai.006G149800 Gossypium raimondii HOM05D007097 ORTHO05D008131 1.2e-35 154.1 218 42.7
MD12G1039700 Malus domestica HOM05D007097 ORTHO05D008131 5.8e-35 151.8 244 41.0
Manes.09G044900 Manihot esculenta HOM05D007097 ORTHO05D008131 7.5e-35 151.4 223 43.5
CiPaw.09G020600 Carya illinoinensis HOM05D007097 ORTHO05D008131 1.7e-34 150.2 243 43.2
Gohir.A09G134600 Gossypium hirsutum HOM05D007097 ORTHO05D008131 8.3e-34 147.9 220 42.3
Gohir.D09G131100 Gossypium hirsutum HOM05D007097 ORTHO05D008131 4.1e-33 145.6 218 40.8
Thecc.05G103600 Theobroma cacao HOM05D007097 ORTHO05D008131 5.4e-33 145.2 221 42.5
Cpa.g.sc104.37 Carica papaya HOM05D007097 ORTHO05D008131 3.5e-32 142.5 225 40.4
MD14G1038300 Malus domestica HOM05D007097 ORTHO05D008131 3.5e-32 142.5 243 39.1
Cfa020025 Carpinus fangiana HOM05D007097 ORTHO05D008131 1.3e-31 140.6 249 41.0
Haze_20191 Corylus avellana HOM05D007097 ORTHO05D008131 1.7e-31 140.2 244 41.8
FvH4_6g20260 Fragaria vesca HOM05D007097 ORTHO05D008131 6.6e-31 138.3 235 38.7
Manes.08G033000 Manihot esculenta HOM05D007097 ORTHO05D008131 1.1e-30 137.5 215 39.5
FAN14G0555 Fragaria x ananassa HOM05D007097 ORTHO05D008131 5.6e-30 135.2 235 38.3
COL.COLO4_29582 Corchorus olitorius HOM05D007097 ORTHO05D008131 7.3e-30 134.8 221 40.7
Glyma.02G197300 Glycine max HOM05D007097 ORTHO05D008131 7.3e-30 134.8 226 37.6
FAN02G1136 Fragaria x ananassa HOM05D007097 ORTHO05D008131 9.5e-30 134.4 235 38.3
FAN05G2168 Fragaria x ananassa HOM05D007097 ORTHO05D008131 9.5e-30 134.4 235 38.3
FAN05G0285 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.4e-28 130.6 235 37.9
FAN09G3875 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.0e-28 129.0 235 37.9
Sabra06G0157000 Salix brachista HOM05D007097 ORTHO05D008131 1.5e-27 127.1 228 39.5
Phvul.007G268300 Phaseolus vulgaris HOM05D007097 ORTHO05D008131 5.8e-27 125.2 221 37.6
RcHm_v2.0_Chr3g0475851 Rosa chinensis HOM05D007097 ORTHO05D008131 2.2e-26 123.2 248 34.3
QL07p036825 Quercus lobata HOM05D007097 ORTHO05D008131 6.4e-26 121.7 258 35.3
Nn6g34702 Nelumbo nucifera HOM05D007097 ORTHO05D008131 2.4e-25 119.8 258 36.0
ClCG10G018390 Citrullus lanatus HOM05D007097 ORTHO05D008131 3.2e-25 119.4 247 35.2
Lj5g0024854 Lotus japonicus HOM05D007097 ORTHO05D008131 7.0e-25 118.2 245 36.3
TPR.G2776 Trifolium pratense HOM05D007097 ORTHO05D008131 9.2e-25 117.9 253 32.8
Ca_11701_v3 Cicer arietinum L. HOM05D007097 ORTHO05D008131 1.6e-24 117.1 228 33.3
Sed0014531 Sechium edule HOM05D007097 ORTHO05D008131 6.0e-24 115.2 245 36.3
Nn2g14294 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.3e-23 114.0 247 36.0
Psat6g114400 Pisum sativum HOM05D007097 ORTHO05D008131 1.7e-23 113.6 216 36.6
Actinidia37742 Actinidia chinensis HOM05D007097 ORTHO05D008131 6.6e-23 111.7 250 32.4
Sed0025399 Sechium edule HOM05D007097 ORTHO05D008131 6.6e-23 111.7 234 35.0
Ciclev10012818m.g Citrus clementina HOM05D007097 ORTHO05D008131 4.3e-22 109.0 193 36.8
TAR633G2246 Trochodendron aralioides HOM05D007097 ORTHO05D008131 2.8e-21 106.3 239 35.6
HPP92_025143 Vanilla planifolia HOM05D007097 ORTHO05D008131 1.8e-20 103.6 251 31.5
HPP92_026079 Vanilla planifolia HOM05D007097 ORTHO05D008131 2.3e-20 103.2 251 31.5
Medtr1g057600 Medicago truncatula HOM05D007097 ORTHO05D008131 1.5e-19 100.5 228 31.6
PGSC0003DMG400028148 Solanum tuberosum HOM05D007097 ORTHO05D008131 1.5e-19 100.5 245 31.4
CAN.G1245.7 Capsicum annuum HOM05D007097 ORTHO05D008131 2.6e-19 99.8 241 32.0
CsaV3_3G037910 Cucumis sativus L. HOM05D007097 ORTHO05D008131 4.4e-19 99.0 248 32.3
Atru.chr8.1373 Acer truncatum HOM05D007097 ORTHO05D008131 7.5e-19 98.2 193 36.3
Dinv31755 Davidia involucrata HOM05D007097 ORTHO05D008131 7.5e-19 98.2 249 33.7
MELO3C009534.2 Cucumis melo HOM05D007097 ORTHO05D008131 1.7e-18 97.1 248 31.9
TAR623G1722 Trochodendron aralioides HOM05D007097 ORTHO05D008131 2.2e-18 96.7 244 30.7
DCAR_020707 Daucus carota HOM05D007097 ORTHO05D008131 4.9e-18 95.5 229 32.8
Solyc10g081930.1 Solanum lycopersicum HOM05D007097 ORTHO05D008131 4.9e-18 95.5 246 30.1
Sopen10g032440 Solanum pennellii HOM05D007097 ORTHO05D008131 4.9e-18 95.5 246 30.1
Solyc01g007190.3 Solanum lycopersicum HOM05D007097 ORTHO05D008131 1.4e-17 94.0 246 32.1
Rhsim03G0065800 Rhododendron simsii HOM05D007097 ORTHO05D008131 1.6e-16 90.5 235 34.5
Migut.J00707 Erythranthe guttata HOM05D007097 ORTHO05D008131 2.1e-16 90.1 268 27.6
Peaxi162Scf00211g00105 Petunia axillaris HOM05D007097 ORTHO05D008131 2.7e-16 89.7 220 29.5
Nitab4.5_0005325g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 3.5e-16 89.4 254 31.5
Sopen01g003170 Solanum pennellii HOM05D007097 ORTHO05D008131 3.5e-16 89.4 242 31.0
Nitab4.5_0000020g0090 Nicotiana tabacum HOM05D007097 ORTHO05D008131 6.0e-16 88.6 256 30.5
SalBow5G4860 Salvia bowleyana HOM05D007097 ORTHO05D008131 6.0e-16 88.6 213 33.3
PGSC0003DMG400016423 Solanum tuberosum HOM05D007097 ORTHO05D008131 2.3e-15 86.7 256 29.7
SGA_v2.0_scaffold13G06627 Striga asiatica HOM05D007097 ORTHO05D008131 2.3e-15 86.7 182 34.6
SGA_v2.0_scaffold31G12846 Striga asiatica HOM05D007097 ORTHO05D008131 5.1e-15 85.5 264 29.9
AUR62006282 Chenopodium quinoa HOM05D007097 ORTHO05D008131 4.3e-14 82.4 249 28.9
ATR0772G224 Amborella trichopoda HOM05D007097 ORTHO05D008131 9.5e-14 81.3 205 29.3
DCAR_009176 Daucus carota HOM05D007097 ORTHO05D008131 9.5e-14 81.3 211 29.9
Cc06_g06500 Coffea canephora HOM05D007097 ORTHO05D008131 1.2e-13 80.9 136 39.7
Sc02g0000610 Simmondsia chinensis HOM05D007097 ORTHO05D008131 1.2e-13 80.9 172 37.2
Lsat_1_v5_gn_1_57020 Lactuca sativa HOM05D007097 ORTHO05D008131 4.7e-13 79.0 224 34.4
Nitab4.5_0001287g0020 Nicotiana tabacum HOM05D007097 ORTHO05D008131 6.2e-13 78.6 211 31.3
HanXRQChr13g0398381 Helianthus annuus HOM05D007097 ORTHO05D008131 2.4e-12 76.6 235 28.9
SGA_v2.0_scaffold35G14013 Striga asiatica HOM05D007097 ORTHO05D008131 4.0e-12 75.9 203 31.0
Nitab4.5_0010913g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 8.9e-12 74.7 227 29.5
Ah.08g210070 Amaranthus hybridus HOM05D007097 ORTHO05D008131 4.4e-11 72.4 226 27.4
Eucgr.K02617 Eucalyptus grandis HOM05D007097 ORTHO05D008131 5.8e-11 72.0 221 30.8
Actinidia37743 Actinidia chinensis HOM05D007097 ORTHO05D008131 9.9e-11 71.2 109 39.4
AUR62026332 Chenopodium quinoa HOM05D007097 ORTHO05D008131 2.9e-10 69.7 203 29.6
ECA248G2186 Erigeron canadensis HOM05D007097 ORTHO05D008131 2.9e-10 69.7 231 31.6
Nn1g01483 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.1e-09 67.8 135 37.8
HanXRQChr01g0025661 Helianthus annuus HOM05D007097 ORTHO05D008131 1.4e-09 67.4 217 29.5
unitig_578.g16474 Utricularia gibba HOM05D007097 ORTHO05D008131 2.4e-09 66.6 104 39.4
GSVIVG01033951001 Vitis vinifera HOM05D009231 ORTHO05D010800 2.4e-09 66.6 84 41.7
unitig_22.g5144 Utricularia gibba HOM05D007097 ORTHO05D008131 4.1e-09 65.9 254 25.2
Peaxi162Scf00388g01015 Petunia axillaris HOM05D007097 ORTHO05D008131 5.4e-09 65.5 84 41.7
Actinidia06180 Actinidia chinensis HOM05D000517 ORTHO05D008131 1.2e-08 64.3 215 30.2
Os04g0685700 Oryza sativa ssp. japonica HOM05D007097 ORTHO05D008131 1.2e-08 64.3 240 26.2
HanXRQChr09g0239941 Helianthus annuus HOM05D007097 ORTHO05D008131 7.8e-08 61.6 241 25.7
Nn2g13712 Nelumbo nucifera HOM05D007097 ORTHO05D008131 3.9e-07 59.3 124 38.7
Ah.08g210060 Amaranthus hybridus HOM05D007097 ORTHO05D008131 7.3e-06 55.1 92 35.9


User provided reference genes

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