Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G195800 Glycine max HOM05D005004 ORTHO05D006097 2.6e-74 282.0 143 100.0
Medtr7g104600 Medicago truncatula HOM05D005004 ORTHO05D006097 1.9e-24 116.3 100 62.0
arahy.Tifrunner.gnm1.ann1.8NC760 Arachis hypogaea HOM05D005004 ORTHO05D006097 3.6e-23 112.1 130 52.3
Glyma.13G153600 Glycine max HOM05D005004 ORTHO05D006097 8.0e-23 110.9 126 53.2
TWI53G1915 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 1.4e-22 110.2 121 52.1
Gohir.A01G138100 Gossypium hirsutum HOM05D005004 ORTHO05D006097 3.1e-22 109.0 124 50.0
Gohir.A01G206300 Gossypium hirsutum HOM05D005004 ORTHO05D006097 3.1e-22 109.0 124 50.8
Gohir.D01G195700 Gossypium hirsutum HOM05D005004 ORTHO05D006097 3.1e-22 109.0 124 50.8
Phvul.003G095500 Phaseolus vulgaris HOM05D005004 ORTHO05D006097 3.1e-22 109.0 99 59.6
TPR.G30035 Trifolium pratense HOM05D005004 ORTHO05D006097 3.1e-22 109.0 93 62.4
Gorai.002G239900 Gossypium raimondii HOM05D005004 ORTHO05D006097 4.0e-22 108.6 125 50.4
Lj1g0020740 Lotus japonicus HOM05D005004 ORTHO05D006097 4.0e-22 108.6 103 60.2
Duzib106G1905 Durio zibethinus HOM05D005004 ORTHO05D006097 5.2e-22 108.2 127 51.2
Haze_19610 Corylus avellana HOM05D005004 ORTHO05D006097 1.2e-21 107.1 111 54.1
QL07p038766 Quercus lobata HOM05D005004 ORTHO05D006097 1.2e-21 107.1 99 56.6
GSVIVG01033842001 Vitis vinifera HOM05D005004 ORTHO05D006097 1.2e-21 107.1 120 53.3
Nn6g34902 Nelumbo nucifera HOM05D005004 ORTHO05D006097 1.5e-21 106.7 107 55.1
Cpa.g.sc5.20 Carica papaya HOM05D005004 ORTHO05D006097 2.6e-21 105.9 130 48.5
Lj1g0017616 Lotus japonicus HOM05D005004 ORTHO05D006097 2.6e-21 105.9 92 63.0
VMungo1215G1361 Vigna mungo HOM05D005004 ORTHO05D006097 2.6e-21 105.9 124 51.6
QL07p039017 Quercus lobata HOM05D005004 ORTHO05D006097 3.4e-21 105.5 98 56.1
Psat3g033320 Pisum sativum HOM05D005004 ORTHO05D006097 4.4e-21 105.1 93 60.2
Dinv21208 Davidia involucrata HOM05D005004 ORTHO05D006097 1.3e-20 103.6 119 50.4
COL.COLO4_29735 Corchorus olitorius HOM05D005004 ORTHO05D006097 1.7e-20 103.2 124 47.6
Ciclev10012954m.g Citrus clementina HOM05D005004 ORTHO05D006097 2.2e-20 102.8 130 48.5
Duzib093G1830 Durio zibethinus HOM05D005004 ORTHO05D006097 2.2e-20 102.8 128 46.9
Gohir.D01G127800 Gossypium hirsutum HOM05D005004 ORTHO05D006097 2.2e-20 102.8 124 49.2
Gorai.002G158400 Gossypium raimondii HOM05D005004 ORTHO05D006097 2.2e-20 102.8 124 49.2
TWI77G0413 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 2.9e-20 102.4 121 48.8
Eucgr.C01891 Eucalyptus grandis HOM05D005004 ORTHO05D006097 3.7e-20 102.1 98 55.1
BcaB05g21795 Brassica carinata HOM05D005004 ORTHO05D006097 4.9e-20 101.7 120 45.0
BcaC06g32094 Brassica carinata HOM05D005004 ORTHO05D006097 8.3e-20 100.9 100 50.0
Hma1.2p1_0232F.1_g097910 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 8.3e-20 100.9 121 49.6
TAR365G0253 Trochodendron aralioides HOM05D005004 ORTHO05D006097 8.3e-20 100.9 120 50.8
arahy.Tifrunner.gnm1.ann1.E5K2FZ Arachis hypogaea HOM05D005004 ORTHO05D006097 1.1e-19 100.5 131 47.3
C09p73010 Brassica napus HOM05D005004 ORTHO05D006097 1.4e-19 100.1 100 50.0
BolC9t60036H Brassica oleracea HOM05D005004 ORTHO05D006097 1.4e-19 100.1 100 50.0
Thecc.05G089000 Theobroma cacao HOM05D005004 ORTHO05D006097 1.4e-19 100.1 100 55.0
Lalb_Chr20g0111711 Lupinus albus HOM05D005004 ORTHO05D006097 1.9e-19 99.8 91 59.3
ATR0174G014 Amborella trichopoda HOM05D005004 ORTHO05D006097 3.2e-19 99.0 99 53.5
Dinv31686 Davidia involucrata HOM05D005004 ORTHO05D006097 3.2e-19 99.0 119 47.9
THA.LOC104826944 Tarenaya hassleriana HOM05D005004 ORTHO05D006097 3.2e-19 99.0 104 51.0
Actinidia07927 Actinidia chinensis HOM05D005004 ORTHO05D006097 4.1e-19 98.6 91 56.0
CANSAT80G1737 Cannabis sativa HOM05D005004 ORTHO05D006097 4.1e-19 98.6 101 53.5
Eucgr.K02041 Eucalyptus grandis HOM05D005004 ORTHO05D006097 4.1e-19 98.6 118 49.2
Lalb_Chr25g0288321 Lupinus albus HOM05D005004 ORTHO05D006097 4.1e-19 98.6 91 59.3
Actinidia05431 Actinidia chinensis HOM05D005004 ORTHO05D006097 5.4e-19 98.2 118 49.2
A10p32210 Brassica napus HOM05D005004 ORTHO05D006097 5.4e-19 98.2 92 53.3
BraA10t45264Z Brassica rapa HOM05D005004 ORTHO05D006097 5.4e-19 98.2 92 53.3
CSS0031559 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 5.4e-19 98.2 100 52.0
Eucgr.L03536 Eucalyptus grandis HOM05D005004 ORTHO05D006097 5.4e-19 98.2 118 49.2
FvH4_6g18690 Fragaria vesca HOM05D005004 ORTHO05D006097 5.4e-19 98.2 99 52.5
FAN14G5527 Fragaria x ananassa HOM05D005004 ORTHO05D006097 5.4e-19 98.2 99 52.5
Manes.08G025200 Manihot esculenta HOM05D005004 ORTHO05D006097 7.0e-19 97.8 120 50.8
Thhalv10014896m.g Eutrema salsugineum HOM05D005004 ORTHO05D006097 9.2e-19 97.4 100 49.0
CARHR209350 Cardamine hirsuta HOM05D005004 ORTHO05D006097 1.2e-18 97.1 124 46.0
BolC2t06126H Brassica oleracea HOM05D005004 ORTHO05D006097 1.6e-18 96.7 127 43.3
MBI17_g08354_MAGBIO Magnolia biondii HOM05D005004 ORTHO05D006097 1.6e-18 96.7 117 49.6
PGR142G4351 Punica granatum HOM05D005004 ORTHO05D006097 1.6e-18 96.7 90 57.8
SalBow5G1155 Salvia bowleyana HOM05D005004 ORTHO05D006097 1.6e-18 96.7 114 49.1
TAR623G0616 Trochodendron aralioides HOM05D005004 ORTHO05D006097 1.6e-18 96.7 105 53.3
C02p01610 Brassica napus HOM05D005004 ORTHO05D006097 2.1e-18 96.3 102 46.1
CsaV3_1G033770 Cucumis sativus L. HOM05D005004 ORTHO05D006097 2.1e-18 96.3 100 48.0
CSS0009320 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 2.7e-18 95.9 98 52.0
FAN02G1574 Fragaria x ananassa HOM05D005004 ORTHO05D006097 2.7e-18 95.9 97 52.6
MD16G1269100 Malus domestica HOM05D005004 ORTHO05D006097 2.7e-18 95.9 90 56.7
Sed0022281 Sechium edule HOM05D005004 ORTHO05D006097 2.7e-18 95.9 100 47.0
BcaC03g12976 Brassica carinata HOM05D005004 ORTHO05D006097 3.5e-18 95.5 118 42.4
Carub.0006s0286 Capsella rubella HOM05D005004 ORTHO05D006097 4.6e-18 95.1 124 44.4
FAN05G0382 Fragaria x ananassa HOM05D005004 ORTHO05D006097 4.6e-18 95.1 97 51.5
FAN05G5799 Fragaria x ananassa HOM05D005004 ORTHO05D006097 4.6e-18 95.1 97 51.5
Potri.006G084300 Populus trichocarpa HOM05D005004 ORTHO05D006097 4.6e-18 95.1 91 54.9
CDE02G2337 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 6.0e-18 94.7 102 52.9
MELO3C020686.2 Cucumis melo HOM05D005004 ORTHO05D006097 7.8e-18 94.4 89 49.4
Sc20g0006290 Simmondsia chinensis HOM05D005004 ORTHO05D006097 7.8e-18 94.4 118 48.3
HPP92_018556 Vanilla planifolia HOM05D005004 ORTHO05D006097 7.8e-18 94.4 106 53.8
Aqoxy5G00209 Aquilegia oxysepala HOM05D005004 ORTHO05D006097 1.0e-17 94.0 93 54.8
ClCG03G001800 Citrullus lanatus HOM05D005004 ORTHO05D006097 1.3e-17 93.6 122 44.3
Sed0018976 Sechium edule HOM05D005004 ORTHO05D006097 1.3e-17 93.6 88 51.1
Cfa016606 Carpinus fangiana HOM05D005004 ORTHO05D006097 1.7e-17 93.2 79 60.8
CiPaw.09G013900 Carya illinoinensis HOM05D005004 ORTHO05D006097 1.7e-17 93.2 115 47.0
CsaV3_1G013480 Cucumis sativus L. HOM05D005004 ORTHO05D006097 1.7e-17 93.2 112 43.8
MD06G1040300 Malus domestica HOM05D005004 ORTHO05D006097 1.7e-17 93.2 90 55.6
Nitab4.5_0004873g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 1.7e-17 93.2 108 52.8
Os08g0369700 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 1.7e-17 93.2 102 50.0
Zm00001eb170730 Zea mays HOM05D005004 ORTHO05D006097 1.7e-17 93.2 122 47.5
BraA02t04792Z Brassica rapa HOM05D005004 ORTHO05D006097 2.3e-17 92.8 90 51.1
Nitab4.5_0000368g0180 Nicotiana tabacum HOM05D005004 ORTHO05D006097 3.0e-17 92.4 119 49.6
Prupe.5G046500 Prunus persica HOM05D005004 ORTHO05D006097 3.9e-17 92.0 91 53.8
RcHm_v2.0_Chr3g0473661 Rosa chinensis HOM05D005004 ORTHO05D006097 3.9e-17 92.0 125 44.0
FAN09G0264 Fragaria x ananassa HOM05D005004 ORTHO05D006097 5.0e-17 91.7 91 52.7
AL6G13490 Arabidopsis lyrata HOM05D005004 ORTHO05D006097 8.6e-17 90.9 122 42.6
CAN.G1164.37 Capsicum annuum HOM05D005004 ORTHO05D006097 8.6e-17 90.9 117 47.0
SGA_v2.0_scaffold184G39963 Striga asiatica HOM05D005004 ORTHO05D006097 8.6e-17 90.9 98 53.1
Atru.chr8.1540 Acer truncatum HOM05D005004 ORTHO05D006097 1.5e-16 90.1 131 41.2
Aa31LG1G21370 Aethionema arabicum HOM05D005004 ORTHO05D006097 1.9e-16 89.7 89 49.4
AT5G03905 Arabidopsis thaliana HOM05D005004 ORTHO05D006097 1.9e-16 89.7 124 41.9
CAN.G1715.5 Capsicum annuum HOM05D005004 ORTHO05D006097 1.9e-16 89.7 89 53.9
Nitab4.5_0003512g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 2.5e-16 89.4 119 48.7
Peaxi162Scf00673g00319 Petunia axillaris HOM05D005004 ORTHO05D006097 2.5e-16 89.4 91 54.9
MSTRG.10365 Avicennia marina HOM05D005004 ORTHO05D006097 3.3e-16 89.0 115 48.7
unitig_899.g15202 Utricularia gibba HOM05D005004 ORTHO05D006097 3.3e-16 89.0 114 49.1
Sp6g38820 Schrenkiella parvula HOM05D005004 ORTHO05D006097 5.6e-16 88.2 90 48.9
CDE04G1264 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 7.3e-16 87.8 87 57.5
Migut.L01778 Erythranthe guttata HOM05D005004 ORTHO05D006097 7.3e-16 87.8 114 45.6
DCAR_009165 Daucus carota HOM05D005004 ORTHO05D006097 9.5e-16 87.4 105 48.6
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 1.2e-15 87.0 88 55.7
TAR369G1152 Trochodendron aralioides HOM05D005004 ORTHO05D006097 1.2e-15 87.0 78 57.7
Solyc01g100410.3 Solanum lycopersicum HOM05D005004 ORTHO05D006097 1.6e-15 86.7 86 57.0
Sopen01g043930 Solanum pennellii HOM05D005004 ORTHO05D006097 1.6e-15 86.7 86 57.0
PGSC0003DMG403002803 Solanum tuberosum HOM05D005004 ORTHO05D006097 1.6e-15 86.7 86 57.0
SGA_v2.0_scaffold35G14070 Striga asiatica HOM05D005004 ORTHO05D006097 2.1e-15 86.3 97 49.5
Sabra06G0064000 Salix brachista HOM05D005004 ORTHO05D006097 2.8e-15 85.9 110 44.5
Hund03985 Selenicereus undatus HOM05D005004 ORTHO05D006097 2.8e-15 85.9 88 54.5
HanXRQChr17g0554781 Helianthus annuus HOM05D005004 ORTHO05D006097 4.7e-15 85.1 97 48.5
HanXRQChr15g0491011 Helianthus annuus HOM05D005004 ORTHO05D006097 6.2e-15 84.7 122 45.1
ClCG03G002740 Citrullus lanatus HOM05D005004 ORTHO05D006097 1.1e-14 84.0 127 39.4
Cc06_g05740 Coffea canephora HOM05D005004 ORTHO05D006097 1.8e-14 83.2 86 51.2
Rhsim03G0075200 Rhododendron simsii HOM05D005004 ORTHO05D006097 1.8e-14 83.2 112 43.8
SEGI_14769 Sequoiadendron giganteum HOM05D005004 ORTHO05D006097 2.3e-14 82.8 107 45.8
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 3.1e-14 82.4 79 54.4
Hma1.2p1_0580F.1_g182880 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 5.2e-14 81.6 78 56.4
EL10Ac7g16917 Beta vulgaris HOM05D005004 ORTHO05D006097 1.2e-13 80.5 78 55.1
AUR62006181 Chenopodium quinoa HOM05D005004 ORTHO05D006097 1.5e-13 80.1 78 52.6
AUR62028526 Chenopodium quinoa HOM05D005004 ORTHO05D006097 1.5e-13 80.1 78 52.6
PSO339G3768 Papaver somniferum HOM05D005004 ORTHO05D006097 1.5e-13 80.1 89 49.4
PSO384G4260 Papaver somniferum HOM05D005004 ORTHO05D006097 1.5e-13 80.1 89 49.4
Lj2A137T29 Lonicera japonica HOM05D005004 ORTHO05D006097 3.4e-13 79.0 78 57.7
vmacro07408 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 3.4e-13 79.0 81 53.1
Aa31LG3G2670 Aethionema arabicum HOM05D005004 ORTHO05D006097 4.4e-13 78.6 97 41.2
SalBow5G4790 Salvia bowleyana HOM05D005004 ORTHO05D006097 2.2e-12 76.3 78 52.6
CBR_g27757 Chara braunii HOM05D005004 ORTHO05D006097 2.9e-12 75.9 104 41.3
Pp3c3_34710 Physcomitrium patens HOM05D005004 ORTHO05D006097 3.7e-12 75.5 105 42.9
AagrBONN_evm.TU.Sc2ySwM_228.4176 Anthoceros agrestis HOM05D005004 ORTHO05D006097 4.9e-12 75.1 105 37.1
ECA236G3187 Erigeron canadensis HOM05D005004 ORTHO05D006097 4.9e-12 75.1 78 53.8
Zm00001eb042730 Zea mays HOM05D005004 ORTHO05D006097 1.1e-11 73.9 116 41.4
Hma1.2p1_0235F.1_g098620 Hydrangea macrophylla HOM05D005004 ORTHO05D012020 2.4e-11 72.8 64 57.8
Os08g0363800 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 7.1e-11 71.2 65 55.4
SMO171G0092 Selaginella moellendorffii HOM05D005004 ORTHO05D006097 2.7e-10 69.3 76 46.1
Mapoly0089s0053 Marchantia polymorpha HOM05D005004 ORTHO05D006097 3.5e-10 68.9 97 42.3
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 5.1e-09 65.1 112 40.2
Hma1.2p1_3639F.1_g337130 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 6.6e-09 64.7 78 48.7
MCO02G129 Micromonas commoda HOM05D005004 ORTHO05D006097 2.5e-08 62.8 94 38.3
vmacro08717 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 4.7e-07 58.5 50 58.0
Cc06_g20090 Coffea canephora HOM05D005004 ORTHO05D006097 3.1e-06 55.8 36 72.2


User provided reference genes

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