Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.8e-222 775.8 443 100.0
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 6.4e-212 740.7 443 89.8
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 4.0e-206 721.5 443 84.9
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 2.5e-179 632.5 446 76.7
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 7.4e-176 620.9 447 74.3
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.7e-167 593.2 445 70.6
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.1e-166 590.5 447 71.1
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 4.1e-166 588.6 447 70.7
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 5.9e-165 584.7 445 70.3
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 5.9e-165 584.7 367 85.6
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 6.5e-164 581.3 445 69.9
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.1e-163 580.5 443 68.8
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 3.2e-163 578.9 446 67.9
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 9.4e-163 577.4 445 68.5
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.2e-162 577.0 503 63.4
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 1.6e-162 576.6 449 69.7
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.9e-161 572.0 443 67.0
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 4.4e-160 568.5 448 67.6
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 4.4e-160 568.5 368 78.0
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.3e-159 567.0 445 66.5
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.1e-158 562.4 447 66.9
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 4.1e-158 562.0 357 79.0
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 2.0e-157 559.7 421 72.4
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 7.7e-157 557.8 455 65.3
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.0e-156 557.4 355 78.0
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.2e-156 556.2 443 65.9
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.1e-155 553.9 372 74.7
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 5.5e-155 551.6 354 78.0
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.1e-154 549.7 446 65.7
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 6.8e-153 544.7 354 77.1
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.2e-152 543.9 362 73.5
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 2.0e-152 543.1 443 65.2
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 3.4e-152 542.3 460 63.7
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.8e-150 536.6 424 65.1
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.4e-150 536.2 417 67.4
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 9.1e-150 534.3 451 64.1
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.2e-149 533.9 369 73.7
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.3e-148 530.4 365 71.2
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.2e-147 525.8 348 74.7
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 4.2e-147 525.4 330 78.2
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 7.2e-147 524.6 399 70.4
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 9.4e-147 524.2 330 78.5
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-146 522.7 446 62.8
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 6.1e-146 521.5 448 61.6
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 6.1e-146 521.5 370 70.0
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 8.0e-146 521.2 383 70.5
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.0e-146 521.2 431 63.3
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 1.2e-144 517.3 330 78.2
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 2.0e-144 516.5 368 72.6
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 2.0e-144 516.5 428 64.7
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.6e-144 516.2 329 76.9
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 3.4e-144 515.8 356 74.7
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 4.4e-144 515.4 370 69.7
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 7.5e-144 514.6 369 72.1
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 9.8e-144 514.2 426 64.8
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.3e-143 513.8 343 74.9
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 2.8e-143 512.7 368 71.7
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 4.8e-143 511.9 447 60.4
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 8.3e-143 511.1 457 59.7
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 5.4e-142 508.4 433 62.8
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 1.2e-141 507.3 330 76.1
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 3.5e-141 505.8 414 64.5
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 7.7e-141 504.6 442 61.5
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.7e-140 503.4 375 69.1
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 3.8e-140 502.3 396 69.2
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.8e-140 502.3 428 62.1
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 6.6e-140 501.5 337 74.2
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 8.6e-140 501.1 329 73.6
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.1e-139 500.7 398 65.3
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.1e-139 500.7 428 61.9
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 3.3e-139 499.2 351 72.4
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 3.3e-139 499.2 373 68.9
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.6e-138 495.7 368 67.4
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 1.4e-137 493.8 358 69.3
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 2.3e-137 493.0 303 79.5
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 4.0e-137 492.3 353 69.4
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.8e-135 486.1 389 63.8
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 4.9e-135 485.3 365 69.9
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 4.1e-134 482.3 337 70.0
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.2e-133 480.7 356 69.4
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.0e-133 479.9 346 70.5
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.7e-133 479.6 392 65.1
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 1.7e-132 476.9 348 71.3
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 5.0e-132 475.3 330 70.6
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 5.0e-132 475.3 439 59.0
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.5e-131 473.8 331 69.2
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 2.5e-131 473.0 306 75.8
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.6e-130 469.2 432 59.0
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.0e-130 468.0 315 74.0
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.4e-129 467.2 360 66.4
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.8e-129 466.8 356 66.0
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.3e-129 466.5 352 67.9
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 4.0e-129 465.7 492 56.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 8.9e-129 464.5 457 56.2
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.6e-128 463.0 452 56.0
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.7e-127 460.3 452 56.2
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.1e-126 457.6 313 71.2
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.4e-126 457.2 463 54.9
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 4.1e-126 455.7 355 65.6
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 2.0e-125 453.4 355 65.4
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.5e-125 452.6 368 62.8
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.0e-124 451.1 348 68.7
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.1e-123 447.6 425 58.8
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 5.6e-123 445.3 379 62.0
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.7e-122 442.2 427 55.3
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 2.3e-121 439.9 484 54.3
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.2e-121 438.7 264 81.8
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 3.4e-120 436.0 433 55.2
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.3e-119 434.1 335 63.9
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 1.3e-119 434.1 373 61.1
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 6.4e-119 431.8 362 62.7
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 8.3e-119 431.4 373 60.9
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 7.1e-118 428.3 336 64.6
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.6e-117 427.2 326 66.3
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.1e-117 426.8 364 58.5
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 2.7e-117 426.4 282 74.8
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.0e-117 425.2 374 58.0
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 1.0e-116 424.5 311 72.3
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.7e-116 423.7 340 61.8
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 9.5e-115 417.9 311 64.6
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 4.7e-114 415.6 470 52.6
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 5.2e-113 412.1 450 52.2
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 5.2e-113 412.1 365 57.3
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 2.9e-111 406.4 409 53.5
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 6.4e-111 405.2 316 64.2
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 3.5e-109 399.4 329 60.2
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 6.0e-109 398.7 409 53.1
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.0e-108 397.9 287 72.8
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.3e-108 396.7 510 47.6
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 4.3e-107 392.5 319 63.9
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 2.1e-106 390.2 366 56.6
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 6.4e-103 378.6 386 52.1
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.4e-97 360.1 349 53.9
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 1.5e-96 357.5 420 48.1
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 3.8e-95 352.8 372 49.7
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-93 346.7 358 54.7
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 3.0e-92 343.2 375 53.3
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 3.9e-92 342.8 361 54.0
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 5.1e-92 342.4 373 51.5
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.5e-91 340.9 361 53.7
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 2.5e-91 340.1 340 51.5
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 2.1e-85 320.5 346 50.9
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.9e-84 316.2 400 49.2
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 6.7e-84 315.5 208 76.9
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.5e-83 313.5 320 53.4
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.5e-83 313.5 320 53.4
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.6e-82 310.8 377 47.7
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.7e-79 300.8 319 53.6
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 2.9e-79 300.1 307 53.1
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 5.3e-73 279.3 270 58.9
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 3.9e-68 263.1 169 80.5
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 2.5e-67 260.4 168 79.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.3e-59 233.0 336 42.3
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 2.0e-51 207.6 200 55.5
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.3e-50 204.9 153 67.3
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.1e-49 201.8 144 68.8
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 2.0e-40 171.0 139 66.2
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.4e-36 158.3 166 52.4
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.3e-34 151.8 94 75.5
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 2.0e-32 144.4 146 52.7
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 4.7e-29 133.3 119 58.0
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 6.3e-26 122.9 98 60.2
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.8e-25 121.3 133 51.1
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.2e-24 118.6 84 71.4
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 5.9e-24 116.3 94 60.6
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.3e-23 114.4 101 58.4
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 5.0e-23 113.2 94 60.6
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 6.8e-20 102.8 166 39.2
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 5.7e-19 99.8 73 74.0
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.4e-17 95.1 64 78.1
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 6.6e-15 86.3 96 54.2
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 2.1e-13 81.3 124 40.3
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 6.8e-12 76.3 54 61.1
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 6.8e-12 76.3 54 61.1
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 6.8e-12 76.3 102 47.1
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 4.4e-11 73.6 124 38.7
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 9.8e-11 72.4 204 28.4
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 9.8e-11 72.4 49 65.3
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 3.7e-10 70.5 151 35.8
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 6.4e-10 69.7 89 41.6
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 7.0e-09 66.2 39 79.5
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 8.6e-07 59.3 51 52.9
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 2.5e-06 57.8 89 40.4


User provided reference genes

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