Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 4.9e-73 277.7 141 100.0
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 2.8e-60 235.3 144 85.4
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 2.6e-50 202.2 140 78.6
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.7e-49 199.5 143 74.8
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 1.6e-47 193.0 139 75.5
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 3.2e-40 168.7 148 62.8
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 4.2e-40 168.3 160 63.1
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 9.3e-40 167.2 158 61.4
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 2.7e-39 165.6 144 63.2
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 4.6e-39 164.9 160 60.0
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 2.3e-38 162.5 151 62.3
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 2.0e-34 149.4 151 58.9
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 2.0e-34 149.4 150 61.3
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 1.5e-29 133.3 160 51.9
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 4.3e-29 131.7 164 53.0
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 7.4e-29 131.0 158 55.1
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.3e-28 130.2 163 48.5
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 2.8e-28 129.0 168 51.8
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 2.8e-28 129.0 160 53.8
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 4.8e-28 128.3 148 53.4
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.8e-28 128.3 150 53.3
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.1e-27 127.1 150 52.7
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.1e-27 127.1 148 53.4
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.1e-27 127.1 148 53.4
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 5.3e-27 124.8 152 52.6
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 6.9e-27 124.4 158 50.6
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 2.0e-26 122.9 161 49.7
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 2.6e-26 122.5 161 49.1
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.6e-26 122.5 155 51.6
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 2.6e-26 122.5 155 51.6
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 3.4e-26 122.1 162 47.5
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 5.0e-25 118.2 84 70.2
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 6.5e-25 117.9 157 51.0
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 8.5e-25 117.5 157 47.8
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 8.5e-25 117.5 162 48.8
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 1.9e-24 116.3 89 64.0
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 3.2e-24 115.5 151 51.0
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 4.2e-24 115.2 121 54.5
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 5.5e-24 114.8 164 45.7
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 7.2e-24 114.4 83 68.7
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 1.2e-23 113.6 85 67.1
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 2.1e-23 112.8 156 48.7
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 2.7e-23 112.5 119 49.6
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 3.6e-23 112.1 122 54.9
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 3.6e-23 112.1 91 61.5
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 4.6e-23 111.7 83 68.7
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 6.1e-23 111.3 155 45.2
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 6.1e-23 111.3 83 66.3
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 6.1e-23 111.3 120 50.0
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 7.9e-23 110.9 166 47.6
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 7.9e-23 110.9 91 60.4
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 1.0e-22 110.5 150 46.7
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 1.4e-22 110.2 150 46.7
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 1.4e-22 110.2 150 46.7
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 1.8e-22 109.8 90 62.2
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.8e-22 109.8 172 41.9
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 1.8e-22 109.8 102 60.8
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 2.3e-22 109.4 84 66.7
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 3.9e-22 108.6 90 61.1
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 5.1e-22 108.2 86 64.0
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 6.7e-22 107.8 83 66.3
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 8.8e-22 107.5 95 58.9
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 8.8e-22 107.5 170 42.4
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 2.0e-21 106.3 86 64.0
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 2.6e-21 105.9 84 64.3
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 3.3e-21 105.5 154 41.6
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 3.3e-21 105.5 154 48.7
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 3.3e-21 105.5 154 48.7
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 3.3e-21 105.5 83 63.9
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 3.3e-21 105.5 90 57.8
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.4e-21 105.1 96 59.4
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 4.4e-21 105.1 90 56.7
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 5.7e-21 104.8 84 63.1
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 7.4e-21 104.4 85 62.4
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 9.7e-21 104.0 154 44.2
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 9.7e-21 104.0 114 48.2
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 1.3e-20 103.6 86 60.5
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 1.7e-20 103.2 84 65.5
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 1.7e-20 103.2 84 65.5
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 1.7e-20 103.2 163 43.6
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 1.7e-20 103.2 126 48.4
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 2.2e-20 102.8 149 46.3
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 2.8e-20 102.4 166 45.2
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 2.8e-20 102.4 84 64.3
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 3.7e-20 102.1 136 44.1
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 1.4e-19 100.1 83 57.8
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 5.3e-19 98.2 87 56.3
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 6.9e-19 97.8 84 57.1
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 6.9e-19 97.8 84 57.1
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 6.9e-19 97.8 83 56.6
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 2.6e-18 95.9 99 48.5
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 4.5e-18 95.1 83 55.4
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 1.3e-17 93.6 83 54.2
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 6.5e-17 91.3 83 54.2
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 6.5e-17 91.3 90 52.2
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.1e-16 90.5 95 49.5
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 4.2e-16 88.6 92 46.7
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.2e-16 87.8 92 55.4
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.6e-15 86.7 104 49.0
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 1.4e-14 83.6 129 38.0
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 2.8e-12 75.9 85 44.7
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.8e-12 75.1 56 64.3
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 2.4e-11 72.8 158 38.0
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 2.0e-10 69.7 85 37.6
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 7.7e-10 67.8 50 68.0
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.5e-08 63.5 82 42.7
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 7.2e-08 61.2 81 35.8
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 1.6e-07 60.1 56 57.1
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 1.0e-06 57.4 47 61.7


User provided reference genes

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