Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 2.1e-253 878.6 467 100.0
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 2.9e-239 831.6 470 95.1
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 3.1e-225 785.0 474 87.1
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 5.0e-223 777.7 470 87.2
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.7e-200 702.2 465 79.6
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 3.9e-183 645.2 469 70.1
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 3.9e-183 645.2 491 72.9
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 4.6e-176 621.7 475 69.3
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 1.3e-170 603.6 474 68.6
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 2.2e-170 602.8 470 68.3
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 1.9e-169 599.7 478 67.4
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 1.6e-168 596.7 467 66.6
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 2.7e-168 595.9 477 67.3
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.3e-167 593.6 474 66.0
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 8.7e-167 590.9 474 65.8
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 4.3e-166 588.6 473 66.2
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.3e-165 587.0 492 65.7
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.6e-165 586.6 482 64.3
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 2.2e-162 576.2 481 64.9
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 4.9e-162 575.1 479 64.7
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 8.4e-162 574.3 494 65.2
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 5.4e-161 571.6 465 65.2
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 3.5e-160 568.9 462 65.4
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 6.0e-160 568.2 460 65.2
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 5.1e-159 565.1 462 63.9
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 1.3e-157 560.5 471 66.0
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 5.8e-155 551.6 486 61.5
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 3.8e-154 548.9 485 61.9
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 4.9e-154 548.5 466 62.0
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 8.4e-154 547.7 465 63.7
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 2.4e-153 546.2 460 63.9
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 2.4e-153 546.2 469 65.5
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.6e-152 543.5 465 63.0
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 5.1e-151 538.5 465 62.8
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.5e-150 537.0 476 61.3
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.3e-150 535.8 462 63.0
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.8e-149 532.7 469 61.8
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.4e-148 530.4 477 60.2
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 9.0e-148 527.7 478 59.2
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.7e-146 523.5 468 60.0
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.9e-146 521.9 476 60.1
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 6.5e-146 521.5 465 60.4
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 4.2e-145 518.8 475 60.4
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.2e-144 517.3 468 59.2
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 4.6e-144 515.4 478 59.4
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.0e-144 515.0 468 59.0
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 7.9e-144 514.6 475 59.6
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.0e-143 514.2 468 59.0
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.8e-143 513.5 468 58.8
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 3.0e-143 512.7 465 58.5
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 6.7e-143 511.5 469 59.5
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 5.7e-142 508.4 468 58.1
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.8e-141 506.1 479 57.8
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.8e-141 506.1 468 59.2
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.1e-140 504.2 465 58.7
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.8e-140 503.4 469 58.0
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.1e-140 502.7 465 57.0
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 6.9e-140 501.5 470 60.0
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.0e-138 497.7 467 56.7
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 8.4e-138 494.6 475 56.4
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 5.5e-137 491.9 462 56.5
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.6e-136 490.3 467 56.7
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.6e-136 490.3 469 58.0
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.6e-136 488.8 479 56.2
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.8e-135 486.9 466 56.9
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.0e-135 486.1 459 56.6
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.9e-135 485.7 469 57.4
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.9e-134 483.4 477 56.0
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.9e-134 483.4 471 55.4
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 5.7e-134 481.9 480 55.8
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 8.2e-133 478.0 459 55.3
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 2.4e-132 476.5 483 55.1
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 2.4e-132 476.5 483 55.7
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 1.2e-131 474.2 483 54.9
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 5.9e-131 471.9 480 55.2
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.7e-130 470.3 455 55.4
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 5.0e-130 468.8 461 54.4
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 6.5e-130 468.4 484 55.6
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 3.2e-129 466.1 441 57.1
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 5.1e-127 458.8 446 55.2
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 1.5e-126 457.2 446 54.9
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 4.8e-125 452.2 436 56.0
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 5.9e-123 445.3 457 52.1
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 2.2e-122 443.4 461 56.0
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.2e-120 437.6 480 53.1
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 3.6e-120 436.0 468 53.2
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 6.1e-120 435.3 485 52.6
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 6.1e-120 435.3 466 54.1
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.0e-119 434.5 613 44.0
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 3.0e-119 433.0 469 52.7
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.7e-119 431.8 402 59.0
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 7.4e-118 428.3 425 54.1
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.4e-118 428.3 518 49.8
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 1.3e-117 427.6 470 54.0
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.7e-117 427.2 337 65.0
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.2e-117 426.8 470 51.3
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 2.0e-115 420.2 264 77.7
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 8.5e-114 414.8 464 50.0
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.7e-112 409.8 453 48.8
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.6e-112 409.5 453 48.8
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.8e-111 407.1 443 52.4
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 8.8e-111 404.8 253 77.1
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-110 404.4 253 76.7
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-110 404.4 253 76.7
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 3.3e-110 402.9 455 47.5
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 5.7e-110 402.1 269 71.0
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 5.7e-110 402.1 466 47.6
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 1.7e-109 400.6 462 52.4
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 7.7e-107 391.7 583 43.9
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 5.0e-106 389.0 468 47.4
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.6e-104 382.9 439 47.2
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 2.3e-103 380.2 434 48.2
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 5.4e-100 369.0 475 45.1
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 5.4e-100 369.0 470 45.5
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.8e-98 362.8 366 59.0
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 7.2e-97 358.6 267 67.4
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 9.8e-94 348.2 470 45.1
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 2.8e-93 346.7 453 43.5
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.5e-89 334.3 452 42.9
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 8.0e-88 328.6 264 64.4
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 2.4e-84 317.0 436 44.0
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 3.6e-80 303.1 448 43.5
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 1.1e-71 275.0 436 38.1
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 4.1e-68 263.1 433 36.0
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 5.2e-63 246.1 423 34.8
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.3e-50 204.9 453 33.8
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 6.6e-50 202.6 445 33.5
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 2.5e-49 200.7 117 86.3
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 8.4e-45 185.7 330 42.1
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 1.4e-44 184.9 474 31.4
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 1.9e-44 184.5 253 41.5
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.6e-43 181.4 218 44.5
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.0e-42 177.2 336 39.0
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.1e-41 175.3 136 59.6
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.5e-41 174.9 234 47.4
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.4e-41 172.6 456 30.9
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-36 158.7 106 69.8
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 3.1e-31 140.6 223 39.9
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 2.0e-30 137.9 223 39.9
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.0e-30 137.9 179 52.0
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 3.4e-30 137.1 169 49.7
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.7e-29 134.8 226 35.8
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-27 128.6 133 59.4
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 2.3e-26 124.4 228 40.4
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.3e-26 124.4 99 60.6
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 4.8e-24 116.7 189 33.3
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.2e-24 115.9 179 48.0
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 5.9e-22 109.8 154 48.7
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 2.2e-21 107.8 452 25.0
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 6.5e-21 106.3 125 50.4
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 6.5e-21 106.3 125 50.4
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.1e-20 105.5 240 30.0
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 2.5e-20 104.4 450 27.1
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.7e-18 96.3 77 67.5
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 1.9e-17 94.7 113 42.5
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 2.5e-17 94.4 88 51.1
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.3e-17 93.6 77 66.2
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.4e-15 87.8 76 63.2
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-14 85.5 79 62.0
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 2.0e-14 84.7 223 30.9
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 5.7e-09 66.6 87 42.5
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 1.5e-06 58.5 107 44.9


User provided reference genes

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