Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 3.7e-112 408.3 216 100.0
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.4e-95 353.2 216 87.0
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 6.1e-91 337.8 218 85.8
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 6.3e-80 301.2 197 84.8
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 6.0e-54 214.9 215 61.4
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.3e-52 209.1 213 55.4
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 9.5e-52 207.6 206 60.2
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.4e-50 203.8 223 56.5
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 8.9e-50 201.1 211 52.1
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.5e-49 200.3 204 55.9
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.0e-49 199.9 220 55.9
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 3.4e-49 199.1 213 54.0
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.6e-49 198.0 223 54.7
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 9.9e-49 197.6 229 54.6
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 9.9e-49 197.6 209 53.1
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 9.9e-49 197.6 208 54.3
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-48 197.2 223 54.7
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.7e-48 196.8 205 54.1
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.7e-48 196.8 211 56.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.7e-48 196.8 216 57.9
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.2e-48 196.4 212 54.2
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.2e-48 196.4 210 52.4
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 3.8e-48 195.7 210 56.7
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 4.9e-48 195.3 214 52.3
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 6.4e-48 194.9 204 53.4
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 8.4e-48 194.5 200 53.5
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.9e-47 193.4 204 54.4
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.9e-47 193.4 213 54.9
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.9e-47 193.4 211 51.7
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.9e-47 193.4 224 53.6
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.9e-47 193.4 224 53.6
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.4e-47 193.0 213 53.1
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 4.1e-47 192.2 219 51.1
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 9.2e-47 191.0 217 56.2
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.2e-46 190.7 197 56.9
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.2e-46 190.7 218 55.5
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.2e-46 190.7 212 53.8
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.2e-46 190.7 214 54.7
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.2e-46 190.7 217 54.8
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.6e-46 190.3 217 51.2
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.6e-46 190.3 223 57.0
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.6e-46 190.3 217 56.2
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.7e-46 189.5 214 51.4
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.6e-46 188.7 216 50.9
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.6e-46 188.7 216 50.9
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.0e-46 188.3 207 56.0
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 6.0e-46 188.3 213 54.9
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 6.0e-46 188.3 222 51.8
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.0e-46 188.3 217 54.4
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 6.0e-46 188.3 217 54.4
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 7.8e-46 188.0 205 50.7
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.0e-45 187.6 217 54.4
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-45 187.2 208 53.8
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.7e-45 186.8 206 56.3
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.7e-45 186.8 223 55.2
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 3.0e-45 186.0 205 50.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 3.0e-45 186.0 234 51.7
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 3.9e-45 185.7 205 50.2
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 3.9e-45 185.7 206 51.5
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 5.1e-45 185.3 207 55.6
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 5.1e-45 185.3 207 55.6
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 6.6e-45 184.9 212 55.2
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 8.6e-45 184.5 206 53.9
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.1e-44 184.1 213 53.1
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.1e-44 184.1 208 54.3
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.5e-44 183.7 221 50.7
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.5e-44 183.0 223 52.9
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 3.3e-44 182.6 205 52.2
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 4.3e-44 182.2 210 50.0
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.3e-44 181.4 213 50.7
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 9.6e-44 181.0 206 55.3
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.2e-43 180.6 214 49.1
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.6e-43 180.3 211 55.0
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 4.7e-43 178.7 218 51.4
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.7e-43 178.7 224 50.4
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.2e-43 178.3 215 52.1
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 8.1e-43 177.9 215 54.0
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.4e-42 177.2 215 53.0
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.8e-42 176.8 212 48.6
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.1e-42 176.0 210 50.5
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.2e-42 175.3 209 49.3
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.5e-41 173.7 214 52.3
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 2.0e-41 173.3 218 45.9
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 2.0e-41 173.3 213 52.1
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 5.8e-41 171.8 215 54.9
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 5.8e-41 171.8 208 51.4
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.9e-41 171.0 209 48.3
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.3e-40 170.6 216 46.8
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 4.9e-40 168.7 223 45.3
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 6.4e-40 168.3 203 50.2
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 8.4e-40 167.9 221 47.5
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.1e-39 167.5 207 48.3
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.4e-39 167.2 218 47.2
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.2e-39 166.0 211 48.3
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 5.4e-39 165.2 214 45.3
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 9.3e-39 164.5 226 48.7
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.2e-38 164.1 203 47.3
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.6e-38 163.7 202 48.5
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.6e-38 162.2 167 52.7
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.6e-38 162.2 221 45.7
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 4.6e-38 162.2 200 47.0
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 6.0e-38 161.8 218 50.5
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.7e-37 160.2 204 45.6
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.7e-37 160.2 215 48.8
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.3e-37 159.8 212 50.5
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 3.0e-37 159.5 223 43.9
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 3.9e-37 159.1 207 47.8
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 8.7e-37 157.9 195 49.2
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 4.3e-36 155.6 217 42.4
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.6e-35 153.7 152 53.9
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.1e-35 153.3 149 53.0
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.8e-35 152.9 204 47.5
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.4e-34 150.6 149 52.3
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.4e-34 150.6 198 49.5
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 5.3e-34 148.7 231 42.0
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.0e-33 146.7 204 43.1
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.2e-32 143.3 140 57.9
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 4.9e-32 142.1 222 42.3
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.4e-31 139.8 223 38.6
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.2e-30 137.5 225 37.3
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 4.6e-30 135.6 210 40.5
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.0e-29 134.4 213 41.3
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.9e-29 132.5 198 41.9
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.1e-28 131.0 187 43.9
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 5.6e-28 128.6 139 49.6
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 5.6e-28 128.6 197 41.1
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 3.6e-27 125.9 158 47.5
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.9e-26 121.7 126 50.8
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 9.0e-26 121.3 142 49.3
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 3.8e-24 115.9 114 57.9
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.3e-21 107.5 210 37.6
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.3e-21 107.5 140 37.9
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.3e-21 106.7 131 48.9
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 6.7e-21 105.1 84 52.4
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.1e-20 104.4 173 39.9
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.5e-20 103.2 78 55.1
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 3.3e-20 102.8 146 37.0
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 7.4e-20 101.7 111 50.5
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.3e-19 100.9 143 46.2
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.8e-19 99.8 127 49.6
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.4e-18 96.7 127 48.8
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 5.3e-18 95.5 121 43.0
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.5e-17 94.0 209 34.9
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.0e-16 91.3 99 49.5
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.9e-16 89.7 85 50.6
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 3.8e-16 89.4 130 41.5
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.5e-16 88.6 195 34.9
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.4e-15 87.4 100 48.0
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.2e-15 86.3 96 42.7
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.2e-14 84.3 103 41.7
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.9e-13 79.3 125 42.4
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.4e-10 70.1 120 40.8
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.5e-09 67.4 196 32.1
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 2.5e-07 60.1 108 43.5


User provided reference genes

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