Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 7.1e-107 390.6 194 100.0
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 1.1e-96 356.7 195 90.3
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 9.4e-91 337.0 195 84.1
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 5.1e-89 331.3 195 82.1
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 1.4e-81 306.6 194 79.9
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 1.8e-81 306.2 198 78.3
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 2.0e-80 302.8 195 77.4
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 1.7e-79 299.7 196 79.1
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 1.4e-78 296.6 195 77.4
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 2.4e-78 295.8 195 75.4
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 5.2e-73 278.1 195 73.8
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 8.8e-73 277.3 191 73.8
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 4.1e-70 268.5 186 72.6
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 3.8e-68 261.9 187 69.5
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 3.8e-68 261.9 191 68.6
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 3.8e-68 261.9 191 68.6
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 5.0e-68 261.5 179 72.1
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 8.5e-68 260.8 191 68.1
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 8.5e-68 260.8 191 70.2
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 1.5e-67 260.0 185 68.6
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 1.9e-67 259.6 195 68.7
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 1.9e-67 259.6 191 68.1
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 5.5e-67 258.1 188 69.1
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 1.0e-65 253.8 187 67.9
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 1.0e-65 253.8 187 69.0
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.8e-65 253.1 195 64.6
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 5.2e-65 251.5 190 65.8
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 2.6e-64 249.2 182 70.3
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 5.7e-64 248.1 191 67.5
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 9.8e-64 247.3 191 66.5
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 1.3e-63 246.9 194 66.5
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 2.8e-63 245.7 180 67.2
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 6.3e-63 244.6 191 64.9
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 1.4e-62 243.4 194 64.9
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 5.4e-62 241.5 197 65.5
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 2.7e-61 239.2 188 64.9
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 2.7e-61 239.2 179 65.9
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 1.0e-60 237.3 181 66.9
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 1.3e-60 236.9 192 64.6
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 6.5e-60 234.6 191 63.9
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 8.5e-60 234.2 203 61.6
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 1.5e-59 233.4 164 69.5
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.9e-59 233.0 178 63.5
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 2.5e-59 232.6 171 66.7
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 4.2e-59 231.9 182 65.4
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 5.5e-59 231.5 187 64.7
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 1.2e-58 230.3 177 65.0
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 2.1e-58 229.6 194 59.8
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 3.6e-58 228.8 190 60.0
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 6.1e-58 228.0 189 60.3
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 6.1e-58 228.0 189 59.3
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 6.1e-58 228.0 196 58.7
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 1.4e-57 226.9 191 60.7
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 2.3e-57 226.1 175 63.4
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 5.2e-57 224.9 186 61.8
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 8.8e-57 224.2 180 65.0
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 1.2e-56 223.8 166 66.9
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 1.5e-56 223.4 192 60.9
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 2.6e-56 222.6 127 86.6
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 5.7e-56 221.5 158 67.1
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 5.7e-56 221.5 177 62.1
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 5.7e-56 221.5 157 68.8
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 2.2e-55 219.5 167 67.7
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 2.2e-55 219.5 195 56.9
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 2.2e-55 219.5 177 62.7
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 2.2e-55 219.5 192 59.9
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 2.8e-55 219.2 186 61.3
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 4.9e-55 218.4 187 62.0
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 1.4e-54 216.9 187 61.0
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 1.8e-54 216.5 177 63.3
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 2.4e-54 216.1 290 45.5
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 2.4e-54 216.1 193 60.6
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 2.4e-54 216.1 178 61.8
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 4.1e-54 215.3 186 60.8
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 7.0e-54 214.5 169 63.9
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 9.2e-54 214.2 173 60.1
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.2e-53 213.8 157 63.7
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.2e-53 213.8 157 63.7
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 1.6e-53 213.4 188 60.6
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 2.7e-53 212.6 178 60.1
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 5.9e-53 211.5 190 60.0
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 1.3e-52 210.3 177 58.2
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 1.3e-52 210.3 188 61.2
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 2.3e-52 209.5 187 61.0
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 2.3e-52 209.5 189 58.7
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 2.3e-52 209.5 187 61.0
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 2.3e-52 209.5 187 61.0
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 5.0e-52 208.4 154 66.2
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 1.9e-51 206.5 171 62.0
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 2.5e-51 206.1 157 64.3
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 4.3e-51 205.3 143 66.4
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 2.2e-47 193.0 196 55.6
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 2.2e-47 193.0 127 73.2
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 7.0e-46 188.0 183 56.8
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 1.2e-45 187.2 180 54.4
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 2.0e-45 186.4 179 53.6
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 5.6e-43 178.3 148 55.4
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 8.0e-42 174.5 103 82.5
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 2.3e-41 172.9 167 49.7
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.3e-35 152.5 110 63.6
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 7.3e-35 151.4 154 46.8
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 6.2e-34 148.3 133 50.4
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 1.4e-33 147.1 92 73.9
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 6.8e-33 144.8 115 54.8
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.2e-32 144.1 118 59.3
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 9.2e-30 134.4 123 53.7
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 9.5e-27 124.4 86 74.4
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 1.6e-26 123.6 136 47.8
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 1.1e-19 100.9 102 45.1
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 1.6e-18 97.1 125 42.4
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 2.6e-16 89.7 118 43.2
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 2.9e-15 86.3 140 33.6
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 5.4e-14 82.0 64 65.6
MCO16G209 Micromonas commoda HOM05D007042 ORTHO05D008441 7.6e-08 61.6 150 28.0
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 3.2e-06 56.2 56 46.4


User provided reference genes

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