Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1315.4 614 100.0
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1258.8 606 97.0
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1202.6 606 91.7
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 0.0e+00 1188.3 611 89.9
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1184.9 607 90.1
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1183.7 607 90.4
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1179.9 606 89.6
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1169.5 606 88.8
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1169.1 606 88.4
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1163.7 612 86.9
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1160.6 607 87.6
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1144.4 612 85.9
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1112.4 598 85.3
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1109.4 599 83.6
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1104.0 577 86.7
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1099.3 603 82.9
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1097.4 598 83.9
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1097.4 577 86.7
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1095.1 599 83.5
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1093.6 603 83.1
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1092.0 598 82.1
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1091.6 595 84.0
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1090.9 600 82.5
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1088.2 606 82.3
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 0.0e+00 1087.0 597 84.1
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1086.6 611 82.2
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1086.6 602 82.2
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1084.3 586 83.1
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1082.4 599 82.8
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1081.6 601 82.5
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1080.1 602 82.7
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1078.9 597 81.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1075.8 577 85.1
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 4.2e-312 1074.3 597 81.4
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.2e-312 1073.9 577 84.9
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 5.0e-311 1070.5 592 81.9
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 9.2e-310 1066.2 598 80.9
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 3.5e-309 1064.3 599 81.8
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 3.5e-309 1064.3 574 84.1
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.0e-308 1062.8 601 79.2
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.3e-308 1061.6 588 81.8
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 1.1e-307 1059.3 605 80.3
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 2.5e-307 1058.1 598 81.1
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 2.5e-307 1058.1 603 81.8
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 9.6e-307 1056.2 601 81.4
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.2e-306 1055.8 584 82.7
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 2.1e-306 1055.0 596 80.7
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 1.1e-305 1052.7 584 81.7
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 3.1e-305 1051.2 601 82.0
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 5.2e-305 1050.4 577 83.0
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 6.9e-305 1050.0 590 81.0
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 2.6e-304 1048.1 622 76.2
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 7.6e-304 1046.6 599 79.6
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 3.8e-303 1044.3 597 80.1
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 4.6e-301 1037.3 601 77.5
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 7.8e-301 1036.6 744 67.9
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 3.0e-300 1034.6 591 78.3
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 5.1e-300 1033.9 589 78.6
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 8.7e-300 1033.1 605 77.2
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 8.7e-300 1033.1 604 77.2
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 8.7e-300 1033.1 604 77.2
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 2.5e-299 1031.6 605 77.0
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 1.3e-298 1029.2 586 79.0
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 8.1e-298 1026.5 586 78.7
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 8.1e-298 1026.5 586 78.7
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 8.1e-298 1026.5 600 78.0
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 1.8e-297 1025.4 606 77.1
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 4.0e-297 1024.2 577 80.8
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 5.3e-297 1023.8 589 78.4
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 1.7e-295 1018.8 585 78.6
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 2.2e-295 1018.5 595 77.3
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 6.4e-295 1016.9 603 75.8
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 1.6e-293 1012.3 568 79.4
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.6e-293 1012.3 706 68.6
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 6.7e-292 1006.9 576 79.5
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 6.7e-292 1006.9 812 60.7
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 8.1e-290 1000.0 596 77.0
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 1.3e-287 992.6 597 75.2
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 2.2e-287 991.9 655 72.2
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 6.0e-285 983.8 577 80.1
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.6e-282 975.7 599 74.8
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.1e-282 975.3 564 80.1
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 6.2e-282 973.8 634 72.2
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.8e-281 972.2 529 83.6
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.4e-278 962.6 539 82.9
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.5e-278 961.8 634 71.6
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 3.2e-278 961.4 513 85.6
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.4e-273 946.0 574 76.7
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 2.4e-273 945.3 598 73.4
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 5.3e-273 944.1 534 82.4
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 3.4e-272 941.4 548 78.8
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 2.3e-268 928.7 598 73.4
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.5e-267 926.0 565 75.9
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 8.8e-260 900.2 606 71.1
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 3.3e-259 898.3 522 77.4
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 5.5e-254 880.9 544 74.8
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 9.7e-251 870.2 577 70.7
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 8.5e-247 857.1 587 69.2
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.3e-244 849.0 606 67.5
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 8.3e-234 813.9 581 64.0
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 1.1e-230 803.5 580 62.8
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.8e-225 786.2 491 73.3
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.5e-224 781.9 609 60.1
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 8.6e-215 750.7 603 58.2
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 4.7e-213 745.0 447 79.2
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 7.3e-206 721.1 528 62.5
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 8.3e-202 707.6 416 77.4
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 2.1e-189 666.4 457 68.9
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 9.0e-180 634.4 351 82.9
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.3e-178 630.6 434 68.9
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 5.6e-174 615.1 354 79.9
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.3e-125 454.5 462 52.6
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 4.8e-117 426.0 219 84.9
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 5.9e-115 419.1 236 82.2
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 4.0e-79 300.1 142 95.1
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 5.8e-78 296.2 175 78.3
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.8e-72 277.3 178 72.5
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.0e-71 272.3 161 72.7
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 9.3e-60 235.7 130 80.8
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 3.5e-51 207.2 155 62.6
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.3e-50 205.3 340 36.8
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.9e-50 203.8 160 59.4
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.3e-48 198.7 95 90.5
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 8.4e-45 186.0 105 80.0
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 1.5e-41 175.3 121 65.3
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 9.7e-41 172.6 83 89.2
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.1e-34 150.2 103 73.8
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 5.5e-28 130.2 211 35.5
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 3.9e-26 124.0 66 83.3
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.8e-26 122.9 110 54.5
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.2e-22 112.5 82 70.7
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 1.0e-21 109.4 51 92.2
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 5.0e-21 107.1 74 68.9
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 8.5e-21 106.3 225 28.4
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.9e-20 105.1 51 82.4
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.2e-20 103.2 56 80.4
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.2e-20 103.2 78 62.8
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.2e-20 103.2 56 80.4
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.6e-19 102.1 78 62.8
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 3.6e-19 100.9 205 28.3
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.0e-18 99.4 51 78.4
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.0e-18 99.4 51 78.4
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 8.8e-18 96.3 132 41.7
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 7.5e-17 93.2 208 26.0
Lsat_1_v5_gn_1_37120 Lactuca sativa HOM05D001762 ORTHO05D001774 1.3e-16 92.4 227 27.3
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.2e-16 89.7 73 60.3
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.2e-16 89.7 73 60.3
HanXRQChr02g0032121 Helianthus annuus HOM05D001762 ORTHO05D001774 1.8e-15 88.6 227 26.9
ECA247G2688 Erigeron canadensis HOM05D001762 ORTHO05D001774 3.1e-15 87.8 226 27.0
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 5.3e-15 87.0 52 76.9
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 7.7e-14 83.2 75 57.3
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.7e-13 82.0 41 78.0
GSVIVG01016784001 Vitis vinifera HOM05D001762 ORTHO05D001774 5.5e-12 77.0 163 28.8
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 6.3e-08 63.5 263 26.2
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 6.3e-08 63.5 263 26.2
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 8.3e-08 63.2 32 71.9


User provided reference genes

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