Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G162300 Glycine max HOM05D000086 ORTHO05D003081 4.3e-80 301.2 146 100.0
Glyma.19G163600 Glycine max HOM05D000086 ORTHO05D003081 1.4e-54 216.5 133 83.5
Phvul.001G160000 Phaseolus vulgaris HOM05D000086 ORTHO05D003081 4.1e-38 161.8 142 66.9
VMungo1383G1139 Vigna mungo HOM05D000086 ORTHO05D003081 1.4e-33 146.7 137 63.5
TPR.G3525 Trifolium pratense HOM05D000086 ORTHO05D003081 1.4e-25 120.2 140 49.3
Medtr1g070140 Medicago truncatula HOM05D000086 ORTHO05D003081 3.0e-25 119.0 140 50.0
Lj1g0015882 Lotus japonicus HOM05D000086 ORTHO05D003081 1.3e-23 113.6 105 60.0
Glyma.13G122400 Glycine max HOM05D000086 ORTHO05D003081 8.2e-23 110.9 142 51.4
Psat6g055400 Pisum sativum HOM05D000086 ORTHO05D003081 1.8e-22 109.8 141 46.8
VMungo0720G0885 Vigna mungo HOM05D000086 ORTHO05D003081 7.0e-22 107.8 142 48.6
QL09p038258 Quercus lobata HOM05D000086 ORTHO05D003081 2.0e-21 106.3 149 44.3
Phvul.007G194100 Phaseolus vulgaris HOM05D000086 ORTHO05D003081 4.5e-21 105.1 143 47.6
Ca_09687_v3 Cicer arietinum L. HOM05D000086 ORTHO05D003081 5.9e-21 104.8 135 45.9
Glyma.10G036000 Glycine max HOM05D000086 ORTHO05D003081 7.7e-21 104.4 143 49.7
CiPaw.03G262700 Carya illinoinensis HOM05D000086 ORTHO05D003081 1.3e-20 103.6 149 45.6
Potri.002G039700 Populus trichocarpa HOM05D000086 ORTHO05D003081 2.2e-20 102.8 124 46.8
Haze_24613 Corylus avellana HOM05D000086 ORTHO05D003081 5.0e-20 101.7 113 52.2
Duzib133G0700 Durio zibethinus HOM05D000086 ORTHO05D003081 1.4e-19 100.1 140 48.6
CiPaw.04G185900 Carya illinoinensis HOM05D000086 ORTHO05D003081 1.9e-19 99.8 113 50.4
arahy.Tifrunner.gnm1.ann1.NXY4JS Arachis hypogaea HOM05D000086 ORTHO05D003081 4.2e-19 98.6 133 46.6
Cfa002416 Carpinus fangiana HOM05D000086 ORTHO05D003081 7.2e-19 97.8 113 50.4
Psat3g058440 Pisum sativum HOM05D000086 ORTHO05D003081 3.6e-18 95.5 104 53.8
Medtr7g096690 Medicago truncatula HOM05D000086 ORTHO05D003081 1.4e-17 93.6 103 54.4
TWI12G1463 Tripterygium wilfordii HOM05D000086 ORTHO05D003081 1.8e-17 93.2 110 47.3
Manes.12G031500 Manihot esculenta HOM05D000086 ORTHO05D003081 2.3e-17 92.8 130 48.5
Thecc.01G260100 Theobroma cacao HOM05D000086 ORTHO05D003081 3.0e-17 92.4 140 47.1
Sabra02G0031900 Salix brachista HOM05D000086 ORTHO05D003081 5.2e-17 91.7 124 46.0
TPR.G16287 Trifolium pratense HOM05D000086 ORTHO05D003081 5.2e-17 91.7 103 53.4
Duzib138G0126 Durio zibethinus HOM05D000086 ORTHO05D003081 2.6e-16 89.4 141 45.4
Ciclev10024118m.g Citrus clementina HOM05D000086 ORTHO05D003081 5.7e-16 88.2 104 50.0
Lalb_Chr02g0152321 Lupinus albus HOM05D000086 ORTHO05D003081 5.7e-16 88.2 142 44.4
Gohir.D11G135800 Gossypium hirsutum HOM05D000086 ORTHO05D003081 1.7e-15 86.7 120 46.7
Atru.chr5.1650 Acer truncatum HOM05D000086 ORTHO05D003081 3.7e-15 85.5 142 43.0
Cpa.g.sc50.31 Carica papaya HOM05D000086 ORTHO05D003081 3.7e-15 85.5 111 44.1
MD05G1199400 Malus domestica HOM05D000086 ORTHO05D003081 4.8e-15 85.1 119 41.2
Prupe.8G225200 Prunus persica HOM05D000086 ORTHO05D003081 4.8e-15 85.1 117 41.9
Dinv34613 Davidia involucrata HOM05D000086 ORTHO05D003081 8.2e-15 84.3 122 41.8
Sed0007944 Sechium edule HOM05D000086 ORTHO05D003081 1.1e-14 84.0 101 48.5
Lj1C65T7 Lonicera japonica HOM05D000086 ORTHO05D003081 2.4e-14 82.8 130 38.5
GSVIVG01028306001 Vitis vinifera HOM05D000086 ORTHO05D003081 3.1e-14 82.4 135 42.2
COL.COLO4_05175 Corchorus olitorius HOM05D000086 ORTHO05D003081 9.1e-14 80.9 116 50.0
ClCG07G000980 Citrullus lanatus HOM05D000086 ORTHO05D003081 3.5e-13 79.0 114 42.1
MD10G1185600 Malus domestica HOM05D000086 ORTHO05D003081 3.5e-13 79.0 119 38.7
Ca_08664_v3 Cicer arietinum L. HOM05D000086 ORTHO05D003081 1.0e-12 77.4 119 47.9
COL.COLO4_15859 Corchorus olitorius HOM05D000086 ORTHO05D003081 2.2e-12 76.3 121 36.4
CsaV3_3G022510 Cucumis sativus L. HOM05D000086 ORTHO05D003081 1.1e-11 73.9 109 39.4
Eucgr.K03267 Eucalyptus grandis HOM05D000086 ORTHO05D003081 1.5e-11 73.6 106 44.3
Nn1g02728 Nelumbo nucifera HOM05D000086 ORTHO05D003081 2.5e-11 72.8 120 36.7
Nn3g19627 Nelumbo nucifera HOM05D000086 ORTHO05D003081 2.5e-11 72.8 127 35.4
Aa31LG5G3690 Aethionema arabicum HOM05D000086 ORTHO05D003081 7.2e-11 71.2 152 32.2
Rhsim13G0034100 Rhododendron simsii HOM05D000086 ORTHO05D003081 7.2e-11 71.2 108 40.7
Lj6P662T51 Lonicera japonica HOM05D000086 ORTHO05D003081 2.1e-10 69.7 113 38.1
Manes.15G039400 Manihot esculenta HOM05D000086 ORTHO05D003081 2.1e-10 69.7 124 35.5
Thecc.04G253300 Theobroma cacao HOM05D000086 ORTHO05D003081 2.7e-10 69.3 112 36.6
vmacro02654 Vaccinium macrocarpon HOM05D000086 ORTHO05D003081 3.6e-10 68.9 104 37.5
DCAR_018473 Daucus carota HOM05D000086 ORTHO05D003081 6.1e-10 68.2 128 34.4
CSS0002216 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D003081 8.0e-10 67.8 100 41.0
Carub.0008s0518 Capsella rubella HOM05D000086 ORTHO05D003081 1.0e-09 67.4 104 37.5
PGSC0003DMG400017179 Solanum tuberosum HOM05D000086 ORTHO05D003081 1.0e-09 67.4 145 30.3
CANSAT78G0120 Cannabis sativa HOM05D000086 ORTHO05D003081 1.8e-09 66.6 143 30.8
CDE05G1545 Ceratophyllum demersum HOM05D006457 ORTHO05D008275 1.8e-09 66.6 100 41.0
CARHR180180 Cardamine hirsuta HOM05D000086 ORTHO05D003081 2.3e-09 66.2 117 36.8
Gohir.A02G038300 Gossypium hirsutum HOM05D000086 ORTHO05D003081 2.3e-09 66.2 110 35.5
Gohir.D02G044400 Gossypium hirsutum HOM05D000086 ORTHO05D003081 2.3e-09 66.2 110 35.5
Gorai.005G049100 Gossypium raimondii HOM05D000086 ORTHO05D003081 2.3e-09 66.2 110 35.5
Thhalv10009604m.g Eutrema salsugineum HOM05D000086 ORTHO05D003081 3.0e-09 65.9 140 34.3
HanXRQChr10g0281041 Helianthus annuus HOM05D000086 ORTHO05D003081 3.0e-09 65.9 113 36.3
Lsat_1_v5_gn_9_8660 Lactuca sativa HOM05D000086 ORTHO05D003081 3.0e-09 65.9 111 37.8
Solyc09g089890.1 Solanum lycopersicum HOM05D000086 ORTHO05D003081 3.0e-09 65.9 119 31.9
Sopen09g032830 Solanum pennellii HOM05D000086 ORTHO05D003081 3.0e-09 65.9 119 31.9
MSTRG.4126 Avicennia marina HOM05D000086 ORTHO05D003081 4.0e-09 65.5 102 36.3
Cc01_g18430 Coffea canephora HOM05D000086 ORTHO05D003081 4.0e-09 65.5 92 40.2
Thhalv10003389m.g Eutrema salsugineum HOM05D000086 ORTHO05D003081 4.0e-09 65.5 145 31.0
AL8G16880 Arabidopsis lyrata HOM05D000086 ORTHO05D003081 5.2e-09 65.1 136 31.6
A06p47850 Brassica napus HOM05D000086 ORTHO05D003081 5.2e-09 65.1 126 31.7
BraA06t27655Z Brassica rapa HOM05D000086 ORTHO05D003081 5.2e-09 65.1 126 31.7
Cc03_g05390 Coffea canephora HOM05D000086 ORTHO05D003081 5.2e-09 65.1 107 37.4
Atru.chr4.2090 Acer truncatum HOM05D000086 ORTHO05D003081 6.7e-09 64.7 134 32.1
Duzib212G0142 Durio zibethinus HOM05D000086 ORTHO05D003081 6.7e-09 64.7 112 34.8
Hma1.2p1_1006F.1_g247060 Hydrangea macrophylla HOM05D000086 ORTHO05D003081 6.7e-09 64.7 104 36.5
Hma1.2p1_1716F.1_g299070 Hydrangea macrophylla HOM05D000086 ORTHO05D003081 6.7e-09 64.7 104 36.5
Potri.008G165900 Populus trichocarpa HOM05D000086 ORTHO05D003081 8.8e-09 64.3 107 35.5
BcaC06g34654 Brassica carinata HOM05D000086 ORTHO05D003081 1.2e-08 63.9 137 29.2
DCAR_024244 Daucus carota HOM05D000086 ORTHO05D003081 1.5e-08 63.5 128 35.2
Potri.010G072700 Populus trichocarpa HOM05D000086 ORTHO05D003081 1.5e-08 63.5 124 33.9
Sabra08G0126400 Salix brachista HOM05D000086 ORTHO05D003081 1.5e-08 63.5 134 32.1
Sed0004688 Sechium edule HOM05D000086 ORTHO05D003081 1.5e-08 63.5 116 32.8
THA.LOC104826078 Tarenaya hassleriana HOM05D000086 ORTHO05D003081 1.5e-08 63.5 143 32.2
BcaC06g31701 Brassica carinata HOM05D000086 ORTHO05D003081 2.0e-08 63.2 136 28.7
Sc19g0003610 Simmondsia chinensis HOM05D000086 ORTHO05D003081 2.0e-08 63.2 145 28.3
Lsat_1_v5_gn_5_64120 Lactuca sativa HOM05D000086 ORTHO05D003081 2.6e-08 62.8 143 28.0
TWI73G0327 Tripterygium wilfordii HOM05D000086 ORTHO05D003081 2.6e-08 62.8 116 33.6
AT1G04360 Arabidopsis thaliana HOM05D000086 ORTHO05D003081 3.3e-08 62.4 141 33.3
Carub.0001s0353 Capsella rubella HOM05D000086 ORTHO05D003081 3.3e-08 62.4 121 36.4
CARHR003690 Cardamine hirsuta HOM05D000086 ORTHO05D003081 3.3e-08 62.4 120 34.2
Oeu011991.1 Olea europaea HOM05D000086 ORTHO05D003081 3.3e-08 62.4 93 36.6
Migut.D00416 Erythranthe guttata HOM05D000086 ORTHO05D003081 4.4e-08 62.0 90 43.3
AL1G13960 Arabidopsis lyrata HOM05D000086 ORTHO05D003081 5.7e-08 61.6 141 32.6
AT5G43420 Arabidopsis thaliana HOM05D000086 ORTHO05D003081 5.7e-08 61.6 113 33.6
Peaxi162Scf00024g00251 Petunia axillaris HOM05D000086 ORTHO05D003081 5.7e-08 61.6 109 33.0
TAR362G0799 Trochodendron aralioides HOM05D000086 ORTHO05D003081 5.7e-08 61.6 108 35.2
Aqoxy5G00252 Aquilegia oxysepala HOM05D000086 ORTHO05D003081 7.5e-08 61.2 128 34.4
Duzib052G1172 Durio zibethinus HOM05D000086 ORTHO05D003081 7.5e-08 61.2 106 35.8
Cpa.g.sc44.76 Carica papaya HOM05D000086 ORTHO05D003081 9.7e-08 60.8 110 34.5
MELO3C006433.2 Cucumis melo HOM05D000086 ORTHO05D003081 9.7e-08 60.8 115 31.3
Prupe.1G037600 Prunus persica HOM05D000086 ORTHO05D003081 9.7e-08 60.8 106 34.0
Sp2g08300 Schrenkiella parvula HOM05D000086 ORTHO05D003081 9.7e-08 60.8 103 34.0
CiPaw.01G186600 Carya illinoinensis HOM05D000086 ORTHO05D003081 1.3e-07 60.5 115 34.8
QL06p017006 Quercus lobata HOM05D000086 ORTHO05D003081 1.3e-07 60.5 106 34.0
Sabra10G0035500 Salix brachista HOM05D000086 ORTHO05D003081 1.3e-07 60.5 94 36.2
BcaC07g42190 Brassica carinata HOM05D000086 ORTHO05D003081 1.7e-07 60.1 96 36.5
CiPaw.02G113700 Carya illinoinensis HOM05D000086 ORTHO05D003081 1.7e-07 60.1 116 36.2
Duzib151G0879 Durio zibethinus HOM05D000086 ORTHO05D003081 1.7e-07 60.1 112 33.0
Oeu063898.1 Olea europaea HOM05D000086 ORTHO05D003081 1.7e-07 60.1 108 35.2
A09p67900 Brassica napus HOM05D000086 ORTHO05D003081 2.2e-07 59.7 96 37.5
C07p26020 Brassica napus HOM05D000086 ORTHO05D003081 2.2e-07 59.7 99 34.3
BolC7t43132H Brassica oleracea HOM05D000086 ORTHO05D003081 2.2e-07 59.7 99 34.3
BraA09t42123Z Brassica rapa HOM05D000086 ORTHO05D003081 2.2e-07 59.7 96 37.5
FvH4_4g03440 Fragaria vesca HOM05D000086 ORTHO05D003081 2.2e-07 59.7 99 36.4
FAN12G2207 Fragaria x ananassa HOM05D000086 ORTHO05D003081 2.2e-07 59.7 99 36.4
Nitab4.5_0000342g0010 Nicotiana tabacum HOM05D000086 ORTHO05D003081 2.2e-07 59.7 115 31.3
Sp1g03170 Schrenkiella parvula HOM05D000086 ORTHO05D003081 2.2e-07 59.7 118 33.9
THA.LOC104801087 Tarenaya hassleriana HOM05D000086 ORTHO05D003081 2.2e-07 59.7 95 35.8
Medtr1g074190 Medicago truncatula HOM05D000086 ORTHO05D003081 2.8e-07 59.3 113 31.9
Nitab4.5_0003897g0010 Nicotiana tabacum HOM05D000086 ORTHO05D003081 2.8e-07 59.3 141 28.4
TPR.G26455 Trifolium pratense HOM05D000086 ORTHO05D003081 2.8e-07 59.3 120 34.2
BcaC05g24447 Brassica carinata HOM05D000086 ORTHO05D003081 3.7e-07 58.9 120 33.3
Cfa008325 Carpinus fangiana HOM05D000086 ORTHO05D003081 3.7e-07 58.9 115 33.0
MBI17_g07972_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D003081 3.7e-07 58.9 118 35.6
FAN17G2601 Fragaria x ananassa HOM05D000086 ORTHO05D003081 4.8e-07 58.5 99 37.4
BcaC07g42170 Brassica carinata HOM05D000086 ORTHO05D003081 6.3e-07 58.2 114 33.3
C08p52240 Brassica napus HOM05D000086 ORTHO05D003081 6.3e-07 58.2 114 33.3
BolC8t52758H Brassica oleracea HOM05D000086 ORTHO05D003081 6.3e-07 58.2 114 33.3
FAN22G0260 Fragaria x ananassa HOM05D000086 ORTHO05D003081 6.3e-07 58.2 99 36.4
Nitab4.5_0000086g0100 Nicotiana tabacum HOM05D000086 ORTHO05D003081 6.3e-07 58.2 90 34.4
Peaxi162Scf00134g00061 Petunia axillaris HOM05D000086 ORTHO05D003081 6.3e-07 58.2 86 36.0
Psat6g128800 Pisum sativum HOM05D000086 ORTHO05D003081 6.3e-07 58.2 121 31.4
RcHm_v2.0_Chr4g0392431 Rosa chinensis HOM05D000086 ORTHO05D003081 6.3e-07 58.2 99 36.4
Ciclev10005261m.g Citrus clementina HOM05D000086 ORTHO05D003081 8.2e-07 57.8 105 31.4
Manes.03G165400 Manihot esculenta HOM05D000086 ORTHO05D003081 8.2e-07 57.8 104 32.7
TWI09G1647 Tripterygium wilfordii HOM05D000086 ORTHO05D003081 8.2e-07 57.8 117 32.5
Ah.04g156050 Amaranthus hybridus HOM05D000086 ORTHO05D003081 1.1e-06 57.4 117 31.6
MSTRG.9900 Avicennia marina HOM05D000086 ORTHO05D003081 1.1e-06 57.4 99 33.3
Haze_11346 Corylus avellana HOM05D000086 ORTHO05D003081 1.1e-06 57.4 105 33.3
Haze_11347 Corylus avellana HOM05D000086 ORTHO05D003081 1.1e-06 57.4 115 33.0
MD16G1216300 Malus domestica HOM05D000086 ORTHO05D003081 1.1e-06 57.4 99 36.4
HanXRQChr15g0468921 Helianthus annuus HOM05D000086 ORTHO05D003081 1.4e-06 57.0 113 32.7
Lj3P802T37 Lonicera japonica HOM05D000086 ORTHO05D003081 1.4e-06 57.0 107 33.6
Lalb_Chr06g0169361 Lupinus albus HOM05D000086 ORTHO05D003081 1.4e-06 57.0 107 31.8
PGSC0003DMG400016326 Solanum tuberosum HOM05D000086 ORTHO05D003081 1.4e-06 57.0 106 34.0
MELO3C022982.2 Cucumis melo HOM05D000086 ORTHO05D003081 1.8e-06 56.6 119 29.4
Lj5g0025979 Lotus japonicus HOM05D000086 ORTHO05D003081 1.8e-06 56.6 122 28.7
Sopen06g018750 Solanum pennellii HOM05D000086 ORTHO05D003081 1.8e-06 56.6 106 34.0
Aa31LG1G20500 Aethionema arabicum HOM05D000086 ORTHO05D003081 2.4e-06 56.2 111 34.2
C05p02550 Brassica napus HOM05D000086 ORTHO05D003081 2.4e-06 56.2 88 38.6
Eucgr.H03092 Eucalyptus grandis HOM05D000086 ORTHO05D003081 2.4e-06 56.2 124 31.5
PGSC0003DMG400009718 Solanum tuberosum HOM05D000086 ORTHO05D003081 2.4e-06 56.2 86 37.2
Solyc09g066300.3 Solanum lycopersicum HOM05D000086 ORTHO05D003081 3.1e-06 55.8 105 32.4
MD13G1212600 Malus domestica HOM05D000086 ORTHO05D003081 4.1e-06 55.5 99 34.3
Phvul.007G128200 Phaseolus vulgaris HOM05D000086 ORTHO05D003081 4.1e-06 55.5 107 32.7
SGA_v2.0_scaffold67G22769 Striga asiatica HOM05D000086 ORTHO05D003081 4.1e-06 55.5 104 36.5
VMungo0720G2812 Vigna mungo HOM05D000086 ORTHO05D003081 4.1e-06 55.5 121 29.8
A10p02780 Brassica napus HOM05D000086 ORTHO05D003081 5.3e-06 55.1 88 37.5
CSS0023011 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D003081 7.0e-06 54.7 97 35.1
DCAR_027308 Daucus carota HOM05D000086 ORTHO05D003081 7.0e-06 54.7 123 29.3
Glyma.10G187100 Glycine max HOM05D000086 ORTHO05D003081 7.0e-06 54.7 96 37.5
Glyma.20G203400 Glycine max HOM05D000086 ORTHO05D003081 7.0e-06 54.7 136 28.7
Rhsim07G0130100 Rhododendron simsii HOM05D000086 ORTHO05D003081 7.0e-06 54.7 95 34.7
Sopen09g028000 Solanum pennellii HOM05D000086 ORTHO05D003081 7.0e-06 54.7 99 33.3
BcaNung05655 Brassica carinata HOM05D000086 ORTHO05D003081 9.1e-06 54.3 88 37.5
BolC5t29035H Brassica oleracea HOM05D000086 ORTHO05D003081 9.1e-06 54.3 88 37.5
BraA10t42546Z Brassica rapa HOM05D000086 ORTHO05D003081 9.1e-06 54.3 118 31.4
AUR62011883 Chenopodium quinoa HOM05D000086 ORTHO05D003081 9.1e-06 54.3 130 34.6
PGR044G1957 Punica granatum HOM05D000086 ORTHO05D003081 9.1e-06 54.3 114 36.0
Rhsim04G0184800 Rhododendron simsii HOM05D000086 ORTHO05D003081 9.1e-06 54.3 86 34.9
Solyc06g053640.1 Solanum lycopersicum HOM05D000086 ORTHO05D003081 9.1e-06 54.3 106 32.1
vmacro08469 Vaccinium macrocarpon HOM05D000086 ORTHO05D003081 9.1e-06 54.3 95 34.7


User provided reference genes

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