Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1745.7 873 100.0
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1605.1 874 92.6
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1497.3 876 86.4
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1496.5 875 85.8
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1409.8 873 81.9
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1400.6 876 82.1
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1386.7 901 78.7
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1382.1 956 74.4
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1367.8 875 79.9
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1364.7 901 78.4
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1354.0 874 78.6
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1347.8 884 78.2
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1347.0 883 78.7
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1334.3 903 76.3
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1333.9 873 77.5
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1333.9 871 78.0
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1331.2 869 78.5
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1310.0 876 76.4
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1300.0 875 76.7
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1271.5 874 75.1
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1266.9 882 73.6
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1264.6 909 71.3
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1255.7 870 74.5
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1254.6 870 74.6
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1254.6 875 73.9
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1253.4 899 72.4
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1251.1 880 74.2
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1248.8 888 73.6
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1243.0 879 73.6
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1243.0 916 71.2
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1240.7 878 73.3
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1236.9 888 72.7
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1236.5 910 70.4
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1233.8 856 74.6
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1233.8 873 73.1
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1232.6 873 73.1
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1232.2 872 73.1
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1232.2 873 72.7
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1231.5 888 72.1
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1228.0 879 72.1
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1224.5 833 74.5
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1222.2 881 71.7
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1212.6 900 70.6
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1207.2 889 71.0
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1207.2 874 71.1
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1201.4 881 70.3
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1199.9 879 71.3
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1199.5 903 70.0
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1191.8 876 71.1
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1186.4 903 68.7
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1185.6 867 69.9
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1177.5 903 68.3
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1176.4 879 69.3
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1175.6 874 69.8
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1174.1 903 68.1
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1173.7 870 68.5
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1172.9 874 70.3
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1172.9 870 68.3
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1171.8 903 68.0
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1170.2 894 68.7
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1169.1 871 68.2
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1169.1 881 69.6
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1168.3 876 68.9
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1167.5 907 66.4
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1166.0 874 67.0
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1162.9 904 68.1
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1162.1 876 69.2
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1161.7 926 66.4
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1159.4 927 66.2
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1145.6 873 68.6
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1139.4 906 64.3
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1137.5 906 64.2
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1136.3 878 66.7
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1134.4 903 68.9
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1130.9 875 66.5
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1129.8 880 68.3
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1128.6 895 66.5
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1128.2 892 66.4
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1127.1 910 64.8
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1126.3 893 65.8
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1124.4 876 68.9
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1123.6 893 66.3
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1122.5 907 65.7
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1119.4 891 65.7
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1116.7 900 65.4
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1115.9 880 67.7
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1115.9 881 66.2
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1114.8 889 66.9
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1114.0 873 66.4
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1113.2 897 66.8
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1112.4 880 66.7
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1101.7 692 78.8
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1101.3 874 65.0
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1101.3 918 64.5
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1091.6 887 66.4
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1088.6 879 65.3
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1088.6 877 65.7
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1085.9 886 65.7
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1084.3 894 65.3
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1081.6 894 64.9
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1080.9 883 64.3
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1080.5 891 64.5
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1078.5 904 64.5
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1078.2 894 64.8
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1077.0 897 65.1
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1077.0 896 64.4
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1075.5 875 64.8
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 6.0e-312 1074.3 894 64.5
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.2e-311 1072.8 902 63.6
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 1.7e-309 1065.8 889 64.0
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.5e-308 1062.8 822 67.3
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 4.2e-308 1061.2 898 63.3
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 1.8e-306 1055.8 900 63.0
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 4.4e-305 1051.2 878 63.6
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 1.3e-304 1049.7 876 64.5
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.2e-304 1048.9 874 63.8
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 2.8e-304 1048.5 882 62.9
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 5.9e-302 1040.8 800 67.1
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.8e-298 1029.2 869 63.5
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 4.0e-298 1028.1 961 57.4
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 9.5e-292 1006.9 866 61.3
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 6.3e-288 994.2 609 80.5
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.9e-284 982.6 896 59.9
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 4.3e-284 981.5 969 56.4
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 7.3e-284 980.7 880 60.1
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 2.0e-281 972.6 863 62.7
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 9.2e-279 963.8 588 79.6
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.1e-271 940.3 913 57.0
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.1e-270 936.0 916 56.7
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.1e-266 923.7 901 56.2
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 2.6e-265 919.1 830 57.2
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 1.5e-257 893.3 917 55.1
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 4.6e-254 881.7 844 55.1
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 5.4e-247 858.2 825 55.5
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 3.6e-243 845.5 875 53.5
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 1.4e-239 833.6 866 53.1
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.4e-239 832.8 871 52.4
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 7.1e-239 831.2 825 53.1
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 2.1e-235 819.7 886 51.5
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 9.3e-231 804.3 819 54.3
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.5e-230 802.4 604 65.6
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 7.9e-214 748.0 580 69.8
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 1.1e-210 737.6 572 61.9
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 7.7e-209 731.5 845 46.0
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.3e-205 719.9 865 45.4
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 4.7e-198 695.7 866 44.7
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 2.4e-194 683.3 634 59.1
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 1.1e-191 674.5 634 58.4
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.5e-188 664.1 618 53.1
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 2.9e-176 623.2 584 57.9
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 8.6e-168 595.1 898 41.1
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 6.6e-144 515.8 637 44.4
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 5.4e-130 469.5 515 52.4
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 5.3e-125 453.0 443 56.7
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 2.8e-118 430.6 600 39.7
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.3e-112 411.0 503 46.3
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.1e-111 408.7 401 59.1
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 5.9e-100 369.8 264 67.8
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.9e-98 364.8 491 44.4
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 5.3e-93 346.7 698 31.9
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.0e-87 328.2 225 68.9
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.9e-82 311.6 264 60.2
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 2.3e-72 278.1 175 74.3
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 2.4e-61 241.5 539 28.4
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 3.5e-60 237.7 504 30.0
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 6.6e-59 233.4 156 74.4
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 1.3e-35 156.0 188 50.0
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 7.8e-28 130.2 189 45.0
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 8.4e-22 110.2 74 75.7
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 1.6e-20 105.9 63 79.4
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 2.1e-20 105.5 377 29.2
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.5e-18 98.6 73 60.3
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.2e-15 89.7 123 46.3
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 5.4e-13 80.9 74 60.8


User provided reference genes

Program Settings