Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 3.0e-54 214.9 107 100.0
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 1.6e-36 156.0 94 85.1
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 2.8e-36 155.2 94 83.0
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 8.1e-36 153.7 94 84.0
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 1.8e-35 152.5 94 83.0
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 9.0e-35 150.2 94 79.8
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 3.4e-34 148.3 94 80.9
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 4.4e-34 147.9 92 81.5
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 6.4e-33 144.1 92 79.3
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 4.2e-32 141.4 94 73.4
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 1.2e-31 139.8 94 79.8
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 1.2e-31 139.8 93 74.2
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.6e-31 139.4 94 72.3
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.6e-31 139.4 94 73.4
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 2.7e-31 138.7 94 79.8
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 3.5e-31 138.3 94 71.3
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 4.6e-31 137.9 94 73.4
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 4.6e-31 137.9 94 73.4
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 4.6e-31 137.9 94 74.5
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 4.6e-31 137.9 94 71.3
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 2.3e-30 135.6 93 71.0
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 2.3e-30 135.6 94 73.4
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 2.3e-30 135.6 94 73.4
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 5.1e-30 134.4 94 69.1
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 8.7e-30 133.7 94 72.3
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.1e-29 133.3 94 69.1
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.1e-29 133.3 94 69.1
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.1e-29 133.3 94 69.1
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.5e-29 132.9 94 70.2
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 1.5e-29 132.9 92 72.8
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.5e-29 132.9 92 71.7
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.5e-29 132.9 94 69.1
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.9e-29 132.5 94 68.1
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 1.9e-29 132.5 94 70.2
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 1.9e-29 132.5 92 69.6
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 2.5e-29 132.1 93 66.7
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 3.3e-29 131.7 94 67.0
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 3.3e-29 131.7 94 69.1
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.3e-29 131.7 93 66.7
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 3.3e-29 131.7 94 71.3
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.3e-29 131.3 93 66.7
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 5.6e-29 131.0 94 71.3
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 5.6e-29 131.0 92 66.3
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 7.3e-29 130.6 92 69.6
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 9.6e-29 130.2 92 66.3
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 9.6e-29 130.2 94 66.0
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 9.6e-29 130.2 94 66.0
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 2.1e-28 129.0 94 66.0
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 2.1e-28 129.0 94 69.1
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 2.1e-28 129.0 93 66.7
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 2.1e-28 129.0 92 65.2
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 2.8e-28 128.6 93 66.7
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 3.6e-28 128.3 94 67.0
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.1e-27 126.7 101 64.4
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.8e-27 125.9 94 63.8
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.8e-27 125.9 94 63.8
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.8e-27 125.9 93 65.6
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.8e-27 125.9 94 66.0
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.8e-27 125.9 93 66.7
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 2.4e-27 125.6 91 68.1
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 3.1e-27 125.2 92 64.1
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 3.1e-27 125.2 94 66.0
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 3.1e-27 125.2 94 66.0
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 3.1e-27 125.2 94 66.0
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 3.1e-27 125.2 91 69.2
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 4.0e-27 124.8 93 65.6
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 4.0e-27 124.8 94 64.9
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 5.3e-27 124.4 93 65.6
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 5.3e-27 124.4 94 63.8
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 6.9e-27 124.0 94 63.8
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 6.9e-27 124.0 94 68.1
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 9.0e-27 123.6 94 63.8
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 9.0e-27 123.6 94 66.0
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 9.0e-27 123.6 94 63.8
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 1.5e-26 122.9 94 63.8
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 1.5e-26 122.9 94 62.8
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 1.5e-26 122.9 94 62.8
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.0e-26 122.5 92 67.4
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 3.4e-26 121.7 94 62.8
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 7.6e-26 120.6 96 62.5
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 9.9e-26 120.2 93 64.5
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.3e-25 119.8 92 66.3
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 2.2e-25 119.0 92 63.0
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 3.8e-25 118.2 93 62.4
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.4e-24 116.3 93 62.4
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 4.2e-24 114.8 94 66.0
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.6e-23 112.8 92 59.8
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 2.7e-23 112.1 95 62.1
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.3e-22 109.8 92 62.0
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.0e-22 108.6 93 59.1
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 6.7e-22 107.5 94 64.9
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 6.7e-22 107.5 91 58.2
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.1e-21 106.7 93 55.9
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.5e-21 106.3 75 69.3
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 5.3e-19 97.8 66 69.7
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 1.6e-15 86.3 89 51.7
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.5e-15 85.1 63 63.5
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 7.9e-15 84.0 97 41.2
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 7.9e-15 84.0 56 71.4
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 5.1e-14 81.3 70 55.7
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 8.2e-12 73.9 54 63.0
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 3.1e-11 72.0 95 35.8
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 7.1e-08 60.8 59 50.8
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 1.2e-07 60.1 31 90.3
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 1.0e-06 57.0 121 37.2
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.0e-06 57.0 29 75.9
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 2.3e-06 55.8 27 96.3


User provided reference genes

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