Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 3.4e-89 331.6 167 100.0
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 7.8e-70 267.3 163 84.7
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 2.2e-56 222.6 194 63.9
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 7.4e-52 207.6 139 74.1
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 7.4e-52 207.6 139 74.1
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 2.4e-50 202.6 173 61.3
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 6.9e-50 201.1 163 63.2
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 9.0e-50 200.7 173 63.0
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 1.5e-49 199.9 170 65.3
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 5.8e-49 198.0 159 66.0
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 7.6e-49 197.6 158 66.5
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 7.6e-49 197.6 158 63.9
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 1.3e-48 196.8 171 58.5
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 1.7e-48 196.4 165 65.5
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 2.2e-48 196.1 125 76.0
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 2.9e-48 195.7 155 63.9
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 6.5e-48 194.5 163 63.2
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 8.4e-48 194.1 138 68.8
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 4.2e-47 191.8 163 60.7
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 7.1e-47 191.0 158 60.1
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 7.1e-47 191.0 157 65.0
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 6.0e-46 188.0 152 60.5
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 1.3e-45 186.8 170 57.1
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 1.8e-45 186.4 129 70.5
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 6.7e-45 184.5 163 60.1
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 8.7e-45 184.1 172 60.5
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 8.7e-45 184.1 145 64.1
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 1.5e-44 183.3 168 59.5
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 1.5e-44 183.3 171 57.9
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 1.9e-44 183.0 159 61.0
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 1.9e-44 183.0 158 59.5
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 3.3e-44 182.2 149 64.4
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 5.7e-44 181.4 125 68.8
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 7.4e-44 181.0 105 78.1
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 1.3e-43 180.3 163 60.7
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 2.2e-43 179.5 135 64.4
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 2.2e-43 179.5 166 58.4
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 3.7e-43 178.7 159 61.0
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 3.7e-43 178.7 154 61.7
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 3.7e-43 178.7 164 59.1
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 4.8e-43 178.3 147 59.2
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 4.8e-43 178.3 130 67.7
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 4.8e-43 178.3 154 61.0
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 6.3e-43 177.9 154 61.0
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 8.2e-43 177.6 112 72.3
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 8.2e-43 177.6 113 71.7
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 8.2e-43 177.6 164 57.3
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 4.1e-42 175.3 167 55.7
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 5.3e-42 174.9 155 59.4
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 5.3e-42 174.9 153 58.8
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 1.2e-41 173.7 167 55.7
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 1.2e-41 173.7 132 64.4
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.5e-41 173.3 156 57.7
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 1.5e-41 173.3 120 70.0
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 2.0e-41 172.9 143 59.4
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 2.6e-41 172.6 163 60.1
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 4.5e-41 171.8 167 56.3
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 5.9e-41 171.4 170 55.3
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 5.9e-41 171.4 117 69.2
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 1.0e-40 170.6 174 54.6
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 1.0e-40 170.6 164 57.3
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 1.3e-40 170.2 111 71.2
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 1.7e-40 169.9 202 49.5
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 3.8e-40 168.7 161 54.0
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 3.8e-40 168.7 162 57.4
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 5.0e-40 168.3 134 61.9
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 6.5e-40 167.9 170 54.7
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 6.5e-40 167.9 170 54.7
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 6.5e-40 167.9 170 54.7
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 6.5e-40 167.9 146 59.6
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 1.1e-39 167.2 165 55.2
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 1.1e-39 167.2 165 55.2
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 1.9e-39 166.4 105 70.5
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 1.9e-39 166.4 114 64.9
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 1.2e-38 163.7 167 54.5
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 1.2e-38 163.7 108 67.6
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 3.0e-37 159.1 159 53.5
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 5.1e-37 158.3 171 52.0
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 6.7e-37 157.9 192 49.0
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 1.9e-36 156.4 99 69.7
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 1.9e-36 156.4 100 71.0
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 4.3e-36 155.2 124 63.7
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 9.7e-36 154.1 135 63.0
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 2.8e-35 152.5 147 59.9
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 4.5e-33 145.2 143 55.2
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 2.2e-32 142.9 95 69.5
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 2.2e-32 142.9 139 56.8
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 4.2e-31 138.7 87 71.3
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 7.2e-31 137.9 123 52.8
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 2.1e-30 136.3 95 62.1
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 1.0e-29 134.0 113 51.3
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 3.0e-29 132.5 119 52.1
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 3.9e-29 132.1 98 65.3
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 1.1e-28 130.6 140 55.0
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 3.3e-28 129.0 97 62.9
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 8.2e-27 124.4 140 51.4
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 5.3e-26 121.7 131 45.8
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 3.2e-23 112.5 72 70.8
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05D000358 ORTHO05D009346 2.3e-21 106.3 76 61.8
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 8.8e-21 104.4 75 62.7
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.6e-17 93.6 67 65.7
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 4.7e-14 82.0 166 39.2
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 8.8e-13 77.8 88 52.3
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 1.4e-10 70.5 54 57.4
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 4.5e-09 65.5 68 52.9
FAN20G1711 Fragaria x ananassa HOM05D000358 ORTHO05D009346 1.3e-08 63.9 119 35.3
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 1.9e-07 60.1 90 45.6


User provided reference genes

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