Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.6e-300 1034.6 528 100.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.9e-288 994.6 528 96.4
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 5.9e-273 943.7 521 92.7
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 2.5e-271 938.3 511 93.9
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.4e-244 848.2 523 84.9
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 9.0e-237 823.5 511 84.0
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.9e-235 818.5 513 84.4
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 8.4e-235 817.0 519 82.5
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.4e-234 816.2 512 84.2
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 2.7e-233 812.0 519 80.7
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 4.0e-229 798.1 532 79.1
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.5e-228 796.2 531 79.1
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 1.1e-223 780.0 511 80.4
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 3.8e-211 738.4 517 74.1
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 8.5e-211 737.3 536 73.3
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.1e-210 736.9 524 73.1
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.4e-210 736.5 524 74.0
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.4e-210 736.5 524 74.0
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 9.4e-210 733.8 524 73.5
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.1e-207 726.9 523 72.3
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 8.2e-206 720.7 521 72.2
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 2.4e-205 719.2 520 73.1
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.6e-204 715.7 518 72.4
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.6e-204 715.7 518 72.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 4.5e-204 714.9 513 73.9
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.0e-203 713.8 518 72.2
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 8.5e-203 710.7 511 72.2
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.9e-202 709.5 518 72.0
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 4.2e-202 708.4 523 70.9
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.5e-202 708.0 507 72.2
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 2.1e-201 706.1 520 71.0
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.7e-201 705.7 507 72.2
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.9e-201 704.1 507 72.2
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 3.0e-200 702.2 541 70.2
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 3.0e-200 702.2 520 71.2
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.7e-198 696.4 518 70.7
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.7e-198 695.3 519 70.7
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.1e-197 691.8 522 69.7
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.5e-196 689.9 525 67.8
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 4.5e-196 688.3 516 70.9
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 6.5e-195 684.5 527 70.2
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.4e-192 676.8 482 71.4
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.3e-192 676.0 562 65.7
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.5e-191 673.3 521 68.3
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 3.3e-191 672.2 526 68.8
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.7e-190 669.8 548 66.1
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 3.5e-188 662.1 502 69.3
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 5.5e-186 654.8 503 69.2
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 6.1e-185 651.4 538 64.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.4e-183 645.2 540 65.4
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.3e-182 643.7 494 68.0
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.6e-177 626.7 524 65.5
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 6.8e-176 621.3 522 64.0
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 8.8e-176 620.9 526 65.0
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.5e-175 620.2 520 63.3
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.3e-174 617.1 427 73.8
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.3e-171 607.1 567 60.8
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.1e-170 604.0 566 59.0
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.5e-170 603.6 521 61.6
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.2e-169 600.5 500 63.4
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 4.7e-169 598.6 518 63.3
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 4.9e-166 588.6 510 61.0
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 1.0e-163 580.9 508 60.8
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.9e-163 579.3 524 59.5
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.1e-162 577.4 356 82.9
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.0e-160 568.9 527 60.3
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.3e-155 553.1 483 62.5
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 8.0e-153 544.7 525 58.5
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 8.0e-153 544.7 520 58.7
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.5e-151 540.4 402 70.6
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 2.0e-151 540.0 528 57.6
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 8.1e-145 518.1 500 57.6
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 8.1e-145 518.1 500 57.6
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 3.1e-144 516.2 407 67.3
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 3.5e-140 502.7 447 59.1
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-138 497.7 436 63.1
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 8.9e-136 488.0 549 53.6
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.1e-129 466.8 343 70.6
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 3.1e-128 463.0 397 64.0
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 6.9e-128 461.8 495 51.5
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 6.4e-126 455.3 337 70.3
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 3.9e-123 446.0 501 53.1
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.6e-92 342.8 412 51.9
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 5.1e-91 339.3 486 45.7
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.3e-89 334.7 468 44.0
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.6e-76 291.2 202 73.8
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-76 291.2 434 40.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 8.0e-76 288.9 439 40.3
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 3.9e-75 286.6 455 38.9
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.7e-75 285.8 481 39.3
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-74 285.0 459 40.5
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.2e-73 280.8 470 40.2
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.1e-72 278.5 449 39.9
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.1e-72 276.6 525 39.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 5.9e-71 272.7 443 40.2
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 2.2e-70 270.8 446 39.5
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.9e-70 270.4 492 40.0
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.9e-70 270.4 432 40.3
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 3.8e-70 270.0 518 38.4
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.8e-70 270.0 437 41.0
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.1e-69 268.5 449 38.3
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.5e-69 268.1 437 41.2
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.2e-69 266.9 272 57.4
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.2e-68 265.0 460 38.7
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 2.7e-68 263.8 495 36.8
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.2e-67 259.6 447 38.7
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 6.8e-67 259.2 412 42.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.5e-66 258.1 441 39.2
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 3.7e-65 253.4 449 38.8
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 8.3e-65 252.3 454 39.4
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.4e-64 251.5 467 37.5
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 2.4e-64 250.8 420 39.5
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 5.3e-64 249.6 420 39.5
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.6e-63 248.1 421 39.7
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 4.5e-63 246.5 448 39.3
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 5.9e-63 246.1 440 38.0
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 2.2e-62 244.2 440 37.7
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 2.9e-62 243.8 440 37.7
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.7e-60 237.3 428 39.0
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.7e-60 237.3 403 40.0
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 4.7e-60 236.5 438 37.9
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 4.4e-58 229.9 408 38.7
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 1.3e-57 228.4 167 70.7
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 3.1e-56 223.8 492 35.4
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 4.5e-55 219.9 388 39.2
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-53 215.3 419 37.9
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-53 214.5 438 34.2
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 8.0e-52 209.1 375 36.8
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.8e-51 208.0 397 37.0
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 4.0e-51 206.8 378 34.4
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.6e-46 189.5 414 34.3
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-42 178.7 150 60.0
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 2.0e-42 177.9 92 92.4
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 7.0e-40 169.5 422 31.5
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 9.2e-40 169.1 293 38.6
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.6e-39 168.3 430 32.3
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.9e-38 163.7 268 38.8
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.1e-35 155.6 218 44.0
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.4e-34 150.6 238 39.1
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.8e-34 149.8 274 39.1
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.3e-33 148.7 190 47.9
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 7.1e-32 142.9 108 63.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 3.6e-28 130.6 212 42.9
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.8e-27 128.3 264 36.4
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 6.8e-27 126.3 82 84.1
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 2.7e-23 114.4 184 39.1
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 7.8e-23 112.8 178 43.8
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.0e-22 112.5 246 35.4
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.3e-22 111.3 121 51.2
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 3.3e-21 107.5 171 41.5
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.2e-20 105.5 58 87.9
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.6e-20 105.1 143 44.8
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.4e-19 102.1 79 72.2
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.2e-17 94.7 108 51.9
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 4.9e-17 93.6 311 30.5
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.1e-16 92.4 65 63.1
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 3.2e-16 90.9 144 39.6
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 5.4e-16 90.1 339 28.0
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.7e-15 87.8 116 38.8
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.0e-14 85.9 302 26.2
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 6.6e-14 83.2 145 42.8
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.9e-13 81.6 61 62.3
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 3.3e-13 80.9 59 64.4
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 4.3e-13 80.5 327 26.0
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 5.6e-13 80.1 100 42.0
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 5.6e-13 80.1 83 53.0
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.3e-12 79.0 139 36.0
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.6e-12 78.6 81 55.6
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.1e-12 76.3 209 32.5
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 1.8e-11 75.1 56 62.5
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 4.0e-11 73.9 123 37.4
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 5.3e-11 73.6 167 35.3
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 2.0e-10 71.6 60 60.0
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 2.6e-10 71.2 61 60.7
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 5.8e-10 70.1 82 51.2
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 1.7e-09 68.6 178 24.7
Lsat_1_v5_gn_8_129341 Lactuca sativa HOM05D003798 ORTHO05D004652 2.9e-09 67.8 92 45.7
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 3.8e-09 67.4 152 36.8
Medtr7g094400 Medicago truncatula HOM05D003798 ORTHO05D004652 3.2e-08 64.3 41 75.6
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 5.4e-08 63.5 129 32.6
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.2e-07 62.4 67 50.7


User provided reference genes

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