Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G149132 Glycine max HOM05D000054 ORTHO05D213783 1.0e-51 206.5 105 100.0
Glyma.19G152300 Glycine max HOM05D000054 ORTHO05D003784 4.5e-31 137.9 100 78.0
VMungo1383G2340 Vigna mungo HOM05D000054 ORTHO05D003784 5.9e-23 110.9 99 66.7
Ca_08552_v3 Cicer arietinum L. HOM05D000054 ORTHO05D003784 1.9e-13 79.3 103 47.6
Ca_08586_v3 Cicer arietinum L. HOM05D000054 ORTHO05D003784 1.9e-13 79.3 103 47.6
VMungo1383G1639 Vigna mungo HOM05D000054 ORTHO05D003784 7.2e-13 77.4 102 46.1
Gohir.A08G184600 Gossypium hirsutum HOM05D000054 ORTHO05D003784 1.2e-12 76.6 77 49.4
Gohir.D08G202956 Gossypium hirsutum HOM05D000054 ORTHO05D003784 1.2e-12 76.6 77 49.4
Gorai.004G214700 Gossypium raimondii HOM05D000054 ORTHO05D003784 1.2e-12 76.6 77 49.4
Gorai.007G133100 Gossypium raimondii HOM05D000054 ORTHO05D003784 2.1e-12 75.9 102 46.1
Phvul.001G146900 Phaseolus vulgaris HOM05D000054 ORTHO05D003784 2.1e-12 75.9 102 46.1
TPR.G32803 Trifolium pratense HOM05D000054 ORTHO05D003784 6.1e-12 74.3 102 43.1
Gohir.A11G119401 Gossypium hirsutum HOM05D000054 ORTHO05D003784 1.0e-11 73.6 102 45.1
Phvul.007G168100 Phaseolus vulgaris HOM05D000054 ORTHO05D003784 1.8e-11 72.8 101 45.5
Glyma.03G149000 Glycine max HOM05D000054 ORTHO05D003784 2.3e-11 72.4 110 44.5
Lalb_Chr01g0020271 Lupinus albus HOM05D000054 ORTHO05D003784 2.3e-11 72.4 104 46.2
Psat6g169680 Pisum sativum HOM05D000054 ORTHO05D003784 2.3e-11 72.4 109 44.0
Lalb_Chr06g0163221 Lupinus albus HOM05D000054 ORTHO05D003784 3.0e-11 72.0 108 43.5
Thecc.01G286700 Theobroma cacao HOM05D000054 ORTHO05D003784 3.0e-11 72.0 102 43.1
Medtr7g094100 Medicago truncatula HOM05D000054 ORTHO05D003784 4.0e-11 71.6 105 42.9
Ca_10391_v3 Cicer arietinum L. HOM05D000054 ORTHO05D003784 5.2e-11 71.2 101 44.6
Lalb_Chr21g0306641 Lupinus albus HOM05D000054 ORTHO05D003784 5.2e-11 71.2 107 43.9
Glyma.19G152200 Glycine max HOM05D000054 ORTHO05D003784 6.8e-11 70.9 95 43.2
Psat3g066760 Pisum sativum HOM05D000054 ORTHO05D003784 6.8e-11 70.9 106 45.3
VMungo0720G2241 Vigna mungo HOM05D000054 ORTHO05D003784 2.0e-10 69.3 105 45.7
Medtr1g089600 Medicago truncatula HOM05D000054 ORTHO05D003784 3.4e-10 68.6 103 43.7
COL.COLO4_09153 Corchorus olitorius HOM05D000054 ORTHO05D003784 1.3e-09 66.6 83 47.0
TPR.G16926 Trifolium pratense HOM05D000054 ORTHO05D003784 2.8e-09 65.5 109 38.5
TPR.G32836 Trifolium pratense HOM05D000002 ORTHO05D000047 8.3e-09 63.9 59 50.8
Solyc09g074240.1 Solanum lycopersicum HOM05D000054 ORTHO05D003784 1.1e-08 63.5 89 42.7
Sopen09g029060 Solanum pennellii HOM05D000054 ORTHO05D003784 1.4e-08 63.2 89 42.7
Glyma.10G023400 Glycine max HOM05D000054 ORTHO05D003784 1.8e-08 62.8 83 43.4
MELO3C005042.2 Cucumis melo HOM05D000054 ORTHO05D003784 2.4e-08 62.4 98 43.9
Duzib138G0059 Durio zibethinus HOM05D000054 ORTHO05D003784 2.4e-08 62.4 100 40.0
Lj1g0027768 Lotus japonicus HOM05D000054 ORTHO05D003784 2.4e-08 62.4 99 41.4
Lj5g0019972 Lotus japonicus HOM05D000054 ORTHO05D003784 3.1e-08 62.0 105 40.0
Nn4g26112 Nelumbo nucifera HOM05D000054 ORTHO05D003784 5.4e-08 61.2 86 40.7
Glyma.02G150600 Glycine max HOM05D000054 ORTHO05D003784 7.0e-08 60.8 97 42.3
CsaV3_1G012960 Cucumis sativus L. HOM05D000054 ORTHO05D003784 9.2e-08 60.5 98 42.9
MD11G1293500 Malus domestica HOM05D000054 ORTHO05D003784 1.6e-07 59.7 109 38.5
THA.LOC104807107 Tarenaya hassleriana HOM05D000054 ORTHO05D003784 1.6e-07 59.7 61 49.2
CiPaw.07G013000 Carya illinoinensis HOM05D000054 ORTHO05D003784 2.0e-07 59.3 60 45.0
COL.COLO4_13554 Corchorus olitorius HOM05D000054 ORTHO05D025175 2.0e-07 59.3 85 44.7
DCAR_002770 Daucus carota HOM05D000054 ORTHO05D003784 2.0e-07 59.3 98 36.7
TAR362G1332 Trochodendron aralioides HOM05D000054 ORTHO05D003784 2.0e-07 59.3 84 38.1
PGR031G3260 Punica granatum HOM05D000054 ORTHO05D003784 2.7e-07 58.9 111 34.2
RcHm_v2.0_Chr6g0292151 Rosa chinensis HOM05D000054 ORTHO05D003784 5.9e-07 57.8 108 38.0
CANSAT25G0670 Cannabis sativa HOM05D000054 ORTHO05D003784 7.7e-07 57.4 84 40.5
ClCG09G006710 Citrullus lanatus HOM05D000054 ORTHO05D003784 7.7e-07 57.4 107 37.4
DCAR_002768 Daucus carota HOM05D000054 ORTHO05D003784 7.7e-07 57.4 84 42.9
CDE09G0371 Ceratophyllum demersum HOM05D000054 ORTHO05D003784 1.0e-06 57.0 87 35.6
PGR119G0564 Punica granatum HOM05D000054 ORTHO05D003784 1.0e-06 57.0 97 39.2
FAN20G3019 Fragaria x ananassa HOM05D000054 ORTHO05D003784 1.3e-06 56.6 107 37.4
Gohir.D12G006400 Gossypium hirsutum HOM05D000054 ORTHO05D003784 1.3e-06 56.6 104 37.5
Gorai.008G006500 Gossypium raimondii HOM05D000054 ORTHO05D003784 1.3e-06 56.6 104 37.5
arahy.Tifrunner.gnm1.ann1.L5HKCU Arachis hypogaea HOM05D000054 ORTHO05D003784 1.7e-06 56.2 61 47.5
Dinv11272 Davidia involucrata HOM05D000054 ORTHO05D003784 1.7e-06 56.2 83 37.3
Gohir.A12G007000 Gossypium hirsutum HOM05D000054 ORTHO05D003784 1.7e-06 56.2 99 37.4
Aqoxy5G00577 Aquilegia oxysepala HOM05D000054 ORTHO05D003784 2.3e-06 55.8 85 35.3
CAN.G1172.5 Capsicum annuum HOM05D000054 ORTHO05D003784 2.3e-06 55.8 109 35.8
Atru.chr5.1320 Acer truncatum HOM05D000054 ORTHO05D003784 2.9e-06 55.5 105 36.2
FvH4_2g24291 Fragaria vesca HOM05D000054 ORTHO05D003784 2.9e-06 55.5 107 36.4
DCAR_018380 Daucus carota HOM05D000054 ORTHO05D003784 3.8e-06 55.1 80 38.8
MD03G1272600 Malus domestica HOM05D000054 ORTHO05D003784 5.0e-06 54.7 96 37.5
TAR633G2737 Trochodendron aralioides HOM05D000054 ORTHO05D003784 5.0e-06 54.7 84 36.9
DCAR_005827 Daucus carota HOM05D000054 ORTHO05D003784 6.6e-06 54.3 100 36.0
SGA_v2.0_scaffold11G05782 Striga asiatica HOM05D000054 ORTHO05D003784 6.6e-06 54.3 99 35.4


User provided reference genes

Program Settings