Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.9e-105 386.0 206 100.0
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 3.0e-95 352.1 206 91.3
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 7.6e-83 310.8 207 84.5
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.7e-82 309.7 208 83.7
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 4.4e-62 241.9 188 70.2
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.3e-61 240.4 173 78.0
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.3e-61 240.4 173 78.0
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 9.1e-60 234.2 202 67.3
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 5.5e-57 224.9 207 66.2
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 3.0e-55 219.2 183 68.9
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 6.7e-55 218.0 230 61.3
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 9.1e-52 207.6 140 82.9
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 3.6e-40 169.1 228 50.4
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 1.3e-37 160.6 222 48.2
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 4.8e-37 158.7 219 47.0
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 6.3e-37 158.3 186 51.1
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 6.3e-37 158.3 221 48.4
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 8.3e-37 157.9 194 47.4
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 1.1e-36 157.5 189 50.3
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 1.1e-36 157.5 210 48.1
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.1e-36 157.5 184 48.9
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 1.8e-36 156.8 185 50.8
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.4e-36 156.4 231 45.5
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 3.1e-36 156.0 187 49.2
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 3.1e-36 156.0 213 46.0
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 5.4e-36 155.2 186 49.5
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 7.0e-36 154.8 203 48.8
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 1.2e-35 154.1 216 48.1
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 1.2e-35 154.1 194 48.5
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.6e-35 153.7 212 45.8
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 1.6e-35 153.7 184 48.9
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 1.6e-35 153.7 214 44.4
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 2.0e-35 153.3 186 48.4
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 2.0e-35 153.3 208 45.2
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 2.7e-35 152.9 195 48.7
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 2.7e-35 152.9 205 46.8
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 3.5e-35 152.5 198 45.5
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.5e-35 152.1 201 46.3
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 5.9e-35 151.8 221 46.2
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 7.7e-35 151.4 218 46.3
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 7.7e-35 151.4 200 50.0
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 7.7e-35 151.4 216 44.0
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 1.0e-34 151.0 175 50.3
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.0e-34 151.0 183 50.3
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.3e-34 150.6 218 45.9
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 1.3e-34 150.6 202 48.0
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.3e-34 150.6 198 48.0
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 1.7e-34 150.2 220 45.5
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.7e-34 150.2 191 50.3
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 2.3e-34 149.8 213 46.0
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 2.3e-34 149.8 213 46.0
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 2.9e-34 149.4 210 43.8
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 2.9e-34 149.4 198 44.9
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 2.9e-34 149.4 203 44.3
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.9e-34 149.4 201 44.8
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 5.0e-34 148.7 187 48.1
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 5.0e-34 148.7 212 48.6
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 6.5e-34 148.3 199 45.2
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 6.5e-34 148.3 196 46.9
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 6.5e-34 148.3 224 44.6
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 8.6e-34 147.9 196 46.9
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 1.5e-33 147.1 207 43.5
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 1.9e-33 146.7 188 47.9
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 2.5e-33 146.4 209 41.6
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 2.5e-33 146.4 197 45.2
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 3.3e-33 146.0 210 48.1
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.3e-33 146.0 184 47.3
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 3.3e-33 146.0 203 48.8
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 4.2e-33 145.6 190 49.5
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 5.5e-33 145.2 193 48.2
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 5.5e-33 145.2 182 50.0
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 7.2e-33 144.8 194 44.8
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 7.2e-33 144.8 197 46.7
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.2e-32 144.1 210 44.8
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.2e-32 144.1 182 48.4
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 1.2e-32 144.1 213 44.6
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 1.6e-32 143.7 190 45.8
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 2.1e-32 143.3 212 42.0
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.1e-32 143.3 204 47.1
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 2.8e-32 142.9 173 49.7
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.6e-32 142.5 173 49.1
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.6e-32 142.5 173 49.1
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 4.7e-32 142.1 181 50.8
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.0e-32 141.4 173 49.1
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 1.0e-31 141.0 202 46.0
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 1.0e-31 141.0 195 46.7
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 1.0e-31 141.0 190 47.9
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.4e-31 140.6 175 50.3
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 1.4e-31 140.6 225 40.0
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 1.4e-31 140.6 192 47.4
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 1.8e-31 140.2 173 49.1
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 1.8e-31 140.2 227 42.7
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 5.2e-31 138.7 196 45.4
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 6.8e-31 138.3 202 45.5
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 6.8e-31 138.3 200 43.5
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 8.9e-31 137.9 268 39.6
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 2.6e-30 136.3 166 51.2
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.7e-29 133.7 209 44.0
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 1.7e-29 133.7 189 45.5
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 2.2e-29 133.3 172 46.5
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 2.8e-29 132.9 229 43.7
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 6.3e-29 131.7 184 45.7
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 1.4e-28 130.6 206 44.7
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.8e-28 130.2 212 42.0
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 3.1e-28 129.4 164 47.6
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 4.1e-28 129.0 237 40.9
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 3.5e-27 125.9 176 43.8
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 7.8e-27 124.8 180 48.9
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.3e-26 124.0 184 41.3
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 1.1e-25 120.9 165 49.1
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 1.4e-20 104.0 262 35.9
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 1.7e-18 97.1 125 44.8
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 4.7e-16 89.0 124 42.7
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 4.4e-14 82.4 189 33.3
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.7e-13 79.3 113 44.2
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 8.3e-13 78.2 287 28.9
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 3.2e-12 76.3 83 50.6
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 7.8e-11 71.6 77 53.2
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 3.0e-10 69.7 200 28.5
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 9.5e-09 64.7 41 70.7
TPR.G38169 Trifolium pratense HOM05D006240 ORTHO05D007709 6.2e-08 62.0 115 41.7
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 1.8e-07 60.5 213 27.2
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 6.8e-07 58.5 155 27.7
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 5.8e-06 55.5 85 38.8


User provided reference genes

Program Settings