Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 8.8e-142 506.9 251 100.0
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 3.4e-125 451.8 261 87.7
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 5.1e-113 411.4 261 78.5
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 8.9e-110 400.6 261 77.4
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 3.5e-90 335.5 265 67.2
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 9.6e-88 327.4 267 64.0
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 1.4e-86 323.6 273 63.7
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 1.8e-86 323.2 267 63.7
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 5.3e-86 321.6 267 63.7
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 2.4e-83 312.8 261 64.4
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 1.0e-81 307.4 261 65.9
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 6.2e-79 298.1 263 61.6
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 1.1e-78 297.4 269 61.7
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 7.4e-72 274.6 257 58.8
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 1.3e-65 253.8 217 61.8
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 3.9e-65 252.3 239 54.0
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 6.7e-65 251.5 261 50.2
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 1.5e-64 250.4 213 59.6
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 2.5e-64 249.6 269 51.7
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 4.3e-64 248.8 208 59.1
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 9.7e-64 247.7 208 57.7
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 2.2e-63 246.5 271 50.9
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 2.8e-63 246.1 202 60.4
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 8.2e-63 244.6 272 50.0
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 1.1e-62 244.2 189 60.8
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 1.8e-62 243.4 271 50.6
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 1.8e-62 243.4 271 52.0
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 2.4e-62 243.0 200 61.0
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 3.1e-62 242.7 249 51.8
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 4.1e-62 242.3 269 51.3
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 5.3e-62 241.9 271 52.0
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 6.9e-62 241.5 246 51.6
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 1.2e-61 240.7 271 51.7
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 1.2e-61 240.7 186 64.5
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 2.6e-61 239.6 273 49.5
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 4.5e-61 238.8 241 51.9
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 4.5e-61 238.8 194 58.2
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 5.9e-61 238.4 220 60.0
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 5.9e-61 238.4 213 57.3
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 7.7e-61 238.0 197 60.9
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 1.7e-60 236.9 208 58.2
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 1.7e-60 236.9 263 51.0
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 2.2e-60 236.5 256 51.2
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 2.2e-60 236.5 224 52.7
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 2.9e-60 236.1 191 59.2
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 3.8e-60 235.7 272 49.6
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 3.8e-60 235.7 267 46.8
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 5.0e-60 235.3 203 59.1
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 5.0e-60 235.3 192 56.8
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 6.5e-60 235.0 210 57.6
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 8.5e-60 234.6 191 58.6
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 8.5e-60 234.6 250 51.2
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 8.5e-60 234.6 220 51.8
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 1.1e-59 234.2 211 57.3
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 1.9e-59 233.4 192 56.2
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 2.5e-59 233.0 263 48.3
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 2.5e-59 233.0 225 52.9
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 3.2e-59 232.6 200 57.5
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 3.2e-59 232.6 192 57.8
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 3.2e-59 232.6 227 51.1
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 3.2e-59 232.6 200 56.5
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 3.2e-59 232.6 214 56.1
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 5.5e-59 231.9 199 58.8
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 5.5e-59 231.9 192 58.3
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 5.5e-59 231.9 192 58.3
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 5.5e-59 231.9 212 56.6
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 5.5e-59 231.9 210 55.2
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 9.4e-59 231.1 207 57.0
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 1.2e-58 230.7 197 57.9
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 1.6e-58 230.3 192 58.3
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 1.6e-58 230.3 235 54.5
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 2.7e-58 229.6 201 57.2
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 2.7e-58 229.6 271 48.0
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 3.6e-58 229.2 192 57.3
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 3.6e-58 229.2 192 57.3
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 3.6e-58 229.2 192 57.3
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 4.6e-58 228.8 240 50.0
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 6.1e-58 228.4 217 53.5
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 6.1e-58 228.4 203 56.2
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 1.0e-57 227.6 204 56.9
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 6.7e-57 224.9 194 56.7
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 2.0e-56 223.4 217 51.6
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 2.0e-56 223.4 217 51.6
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 7.4e-56 221.5 217 51.6
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 9.7e-56 221.1 217 51.2
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 9.7e-56 221.1 205 55.1
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 9.7e-56 221.1 197 57.9
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 1.7e-55 220.3 194 53.6
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 2.2e-55 219.9 192 58.3
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 6.3e-55 218.4 199 55.3
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 5.3e-54 215.3 192 55.2
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 1.9e-51 206.8 192 53.6
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 1.9e-51 206.8 211 51.2
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 3.3e-48 196.1 197 48.7
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 6.3e-47 191.8 213 47.4
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 1.8e-46 190.3 261 41.4
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 1.3e-44 184.1 251 43.0
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 2.2e-44 183.3 198 46.5
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 2.2e-44 183.3 247 40.9
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 4.1e-38 162.5 148 55.4
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 2.9e-36 156.4 153 52.3
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 6.5e-36 155.2 164 50.0
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 7.2e-35 151.8 153 53.6
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 1.8e-33 147.1 208 39.4
SEGI_30907 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 1.2e-29 134.4 180 40.0
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 2.1e-26 123.6 170 44.1
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 5.2e-25 119.0 160 36.9
arahy.Tifrunner.gnm1.ann1.19RU7Q Arachis hypogaea HOM05D006815 ORTHO05D008536 4.9e-23 112.5 91 64.8
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 3.8e-20 102.8 162 36.4
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 8.9e-17 91.7 185 36.8
SEGI_06955 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 3.4e-16 89.7 121 40.5
CARHR137080 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.4e-14 84.3 61 62.3
Nn6g34990 Nelumbo nucifera HOM05D006815 ORTHO05D008536 4.6e-13 79.3 62 56.5
arahy.Tifrunner.gnm1.ann1.V9LMLG Arachis hypogaea HOM05D006815 ORTHO05D008536 5.4e-06 55.8 37 70.3


User provided reference genes

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