Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 6.4e-257 890.2 434 100.0
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 4.9e-249 864.0 434 96.3
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 2.6e-234 815.1 434 89.9
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 4.5e-234 814.3 432 89.8
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 2.2e-228 795.4 436 87.6
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 2.8e-228 795.0 430 87.7
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 2.0e-226 788.9 429 87.4
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 4.5e-226 787.7 434 87.8
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 1.9e-224 782.3 430 87.2
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 6.1e-223 777.3 430 86.3
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 1.9e-221 772.3 454 83.0
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.4e-219 766.1 432 83.6
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 3.8e-217 758.1 431 81.9
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 8.5e-217 756.9 432 83.1
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 8.5e-217 756.9 440 82.0
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 2.5e-216 755.4 416 86.3
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 4.2e-216 754.6 432 81.7
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 2.1e-215 752.3 432 81.2
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.3e-214 748.8 432 81.2
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 3.9e-214 748.0 432 81.5
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 8.8e-214 746.9 429 80.9
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.5e-213 746.1 431 81.0
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 1.7e-212 742.7 432 80.8
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.7e-212 741.5 432 80.6
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.8e-211 739.2 432 80.1
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 1.8e-211 739.2 432 80.8
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 4.1e-211 738.0 427 81.3
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 2.6e-210 735.3 430 79.8
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 6.5e-209 730.7 431 78.4
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 1.9e-208 729.2 430 78.8
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 3.2e-208 728.4 447 77.0
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 4.2e-208 728.0 432 78.9
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 7.2e-208 727.2 431 78.0
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 9.4e-208 726.9 432 78.9
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.4e-206 723.0 430 78.8
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 3.9e-206 721.5 432 78.7
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 8.8e-206 720.3 429 78.3
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 1.1e-205 719.9 432 78.0
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.1e-205 719.9 430 78.6
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 4.4e-205 718.0 432 78.2
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 5.7e-205 717.6 432 78.2
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 5.7e-205 717.6 428 78.3
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.3e-204 716.5 432 77.8
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 1.3e-204 716.5 432 78.2
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.8e-203 712.6 429 77.2
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 4.1e-203 711.4 432 76.2
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 5.3e-203 711.1 412 80.6
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 5.3e-203 711.1 427 78.0
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 1.2e-202 709.9 431 78.4
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.6e-202 709.5 430 76.7
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 2.0e-202 709.1 430 75.1
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 5.9e-202 707.6 429 76.2
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 5.9e-202 707.6 426 79.1
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 5.9e-202 707.6 430 76.7
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 1.0e-201 706.8 430 75.3
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 5.0e-201 704.5 430 76.3
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 6.5e-201 704.1 431 76.3
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 8.5e-201 703.7 430 76.0
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.1e-200 703.4 432 76.6
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 3.2e-200 701.8 427 76.1
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 5.5e-200 701.0 404 80.7
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.6e-199 699.5 416 78.6
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 2.1e-199 699.1 429 76.0
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 4.7e-199 698.0 429 75.3
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 1.4e-198 696.4 418 78.2
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.8e-198 696.0 428 75.2
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 5.2e-198 694.5 428 75.5
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 6.7e-198 694.1 428 75.5
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 1.5e-197 693.0 428 75.2
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 2.6e-197 692.2 438 73.7
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 3.3e-197 691.8 429 75.3
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 1.7e-196 689.5 429 75.3
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.8e-196 688.7 439 73.8
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 6.3e-196 687.6 413 78.5
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 6.3e-196 687.6 413 78.2
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 7.0e-195 684.1 427 74.7
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 2.0e-194 682.6 415 77.1
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 3.5e-194 681.8 396 79.5
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 7.7e-194 680.6 428 74.3
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 5.0e-193 677.9 412 76.7
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 5.0e-193 677.9 429 74.6
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 6.5e-193 677.6 446 73.5
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.5e-192 676.4 427 74.2
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.8e-190 669.5 432 73.1
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.6e-189 665.6 412 76.5
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 2.6e-189 665.6 432 73.4
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.7e-188 661.8 455 69.9
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.7e-188 661.8 439 72.2
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 4.1e-187 658.3 473 68.5
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 4.4e-181 638.3 488 66.4
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.6e-178 629.8 431 68.4
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 3.9e-177 625.2 389 74.6
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 3.1e-174 615.5 439 68.6
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.6e-173 612.5 429 65.7
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 4.1e-171 605.1 476 62.0
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 7.3e-168 594.3 461 64.9
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 4.7e-167 591.7 385 72.5
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 1.1e-166 590.5 540 58.1
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 5.8e-165 584.7 356 78.4
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 1.7e-164 583.2 365 77.8
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 3.7e-164 582.0 412 68.7
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.9e-163 579.7 375 71.2
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 3.7e-156 555.4 432 63.2
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 2.7e-154 549.3 427 58.3
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 1.2e-151 540.4 430 58.4
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.8e-151 539.3 430 61.9
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.1e-150 535.8 427 58.3
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 4.4e-149 531.9 452 56.9
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 4.9e-148 528.5 455 58.9
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.1e-142 509.2 434 56.5
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 3.4e-141 505.8 413 60.3
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 2.4e-134 483.0 432 53.7
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 2.0e-125 453.4 399 54.6
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 7.1e-123 444.9 270 75.9
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 7.1e-115 418.3 244 78.7
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 5.7e-104 382.1 235 78.7
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 2.9e-100 369.8 196 85.2
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 1.6e-98 364.0 368 46.2
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.6e-98 362.8 196 82.7
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 1.1e-96 357.8 448 42.9
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 6.3e-95 352.1 503 39.2
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 2.6e-93 346.7 279 60.9
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 1.0e-92 344.7 235 71.9
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 2.3e-65 253.8 155 76.8
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 3.2e-62 243.4 197 61.4
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.9e-55 219.5 170 60.6
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 3.1e-49 200.3 184 56.0
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.7e-47 194.5 246 43.5
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.4e-46 191.4 425 31.5
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 1.1e-43 181.8 150 59.3
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 1.2e-42 178.3 95 77.9
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 2.1e-42 177.6 152 57.2
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 5.2e-41 172.9 187 48.1
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 5.8e-40 169.5 103 68.0
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.2e-37 161.8 132 56.1
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 8.9e-33 145.6 150 50.7
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 4.4e-32 143.3 88 70.5
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 9.9e-32 142.1 86 70.9
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 2.2e-31 141.0 125 56.0
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 1.3e-28 131.7 130 54.6
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 7.3e-27 125.9 122 53.3
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 7.1e-22 109.4 131 45.8
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 5.1e-20 103.2 96 52.1
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 1.4e-17 95.1 58 70.7
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 1.5e-16 91.7 67 67.2
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 6.7e-12 76.3 67 56.7
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 1.9e-11 74.7 65 60.0
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.4e-09 68.6 45 66.7
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 9.0e-09 65.9 55 56.4
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 9.0e-09 65.9 55 56.4
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 1.2e-08 65.5 64 53.1
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 1.5e-08 65.1 82 43.9
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 4.5e-08 63.5 51 58.8
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 9.3e-06 55.8 37 67.6


User provided reference genes

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