Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.1e-135 485.7 246 100.0
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 4.8e-92 341.7 245 76.7
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 7.0e-83 311.2 242 71.5
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 3.0e-78 295.8 256 66.0
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 1.1e-75 287.3 256 65.6
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.4e-70 270.4 253 62.8
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 4.3e-64 248.8 259 58.3
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.8e-62 243.4 246 60.6
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.6e-61 239.6 255 57.3
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 5.8e-53 211.8 248 52.4
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 9.8e-53 211.1 251 53.0
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.9e-48 196.8 246 49.2
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.2e-47 194.1 234 49.6
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 3.1e-46 189.5 245 49.4
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 3.1e-46 189.5 244 46.7
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.5e-45 187.2 242 49.6
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 3.4e-45 186.0 242 48.3
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 8.3e-44 181.4 255 44.7
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.1e-43 181.0 253 46.2
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.6e-42 177.2 240 47.1
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 2.1e-42 176.8 240 49.2
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 3.5e-42 176.0 222 47.7
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.0e-41 174.5 243 43.6
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.9e-40 170.2 216 48.6
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.3e-40 169.1 240 44.6
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.3e-40 168.3 251 43.0
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 2.1e-39 166.8 253 43.9
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 8.1e-39 164.9 242 45.0
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.2e-37 161.0 240 42.5
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.5e-37 160.6 209 46.9
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.0e-37 160.2 243 44.0
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 9.9e-37 157.9 219 46.1
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.7e-36 157.1 219 46.1
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.4e-35 154.1 242 44.6
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.9e-35 153.7 257 40.5
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 5.4e-35 152.1 224 43.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 5.4e-35 152.1 224 43.8
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.2e-34 151.0 245 42.0
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.1e-34 150.2 250 41.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.6e-34 149.1 257 40.9
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 4.6e-34 149.1 230 43.9
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 7.8e-34 148.3 246 41.5
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.8e-34 148.3 247 42.9
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-33 147.5 245 40.8
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-33 147.5 245 40.8
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.7e-33 147.1 245 39.6
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.7e-33 147.1 233 41.6
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.7e-33 147.1 214 42.1
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.3e-33 146.7 245 39.6
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 3.0e-33 146.4 241 40.7
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 5.1e-33 145.6 261 41.0
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.6e-33 145.2 257 38.1
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.9e-32 143.7 232 41.4
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 4.3e-32 142.5 259 39.4
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.6e-32 142.1 245 38.8
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 7.3e-32 141.7 232 41.4
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 9.6e-32 141.4 240 38.3
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 9.6e-32 141.4 263 39.5
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.6e-31 140.6 251 38.2
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 2.1e-31 140.2 259 39.4
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.1e-31 140.2 248 37.9
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 2.1e-31 140.2 231 40.7
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.8e-31 139.8 234 40.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 3.6e-31 139.4 224 41.5
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 3.6e-31 139.4 247 39.7
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 4.7e-31 139.0 240 38.8
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.7e-31 139.0 251 37.8
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 4.7e-31 139.0 257 39.7
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 6.2e-31 138.7 211 42.7
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 8.1e-31 138.3 246 40.7
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-30 137.9 251 37.5
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.8e-30 137.1 246 38.2
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.4e-30 136.7 264 39.8
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.4e-30 136.7 248 39.5
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.4e-30 136.7 220 39.5
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 4.0e-30 136.0 257 37.0
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 5.2e-30 135.6 236 38.1
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 5.2e-30 135.6 208 43.3
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 8.9e-30 134.8 241 39.4
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.2e-29 134.4 262 38.2
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.5e-29 134.0 212 41.0
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.5e-29 134.0 245 39.2
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.0e-29 133.7 247 36.8
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 5.8e-29 132.1 264 36.4
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 5.8e-29 132.1 240 37.9
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.3e-28 131.0 251 39.0
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-28 131.0 254 38.6
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.7e-28 130.6 233 38.2
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 3.8e-28 129.4 242 39.3
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.8e-28 129.4 253 37.9
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 6.4e-28 128.6 213 41.3
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 8.4e-28 128.3 235 40.0
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.4e-27 127.5 245 37.1
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.4e-27 127.5 267 37.8
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.9e-27 127.1 249 38.2
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.9e-27 127.1 234 39.7
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.4e-27 126.7 223 38.1
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.4e-27 126.7 215 40.5
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 3.2e-27 126.3 236 40.3
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 3.2e-27 126.3 236 41.1
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 5.4e-27 125.6 209 40.2
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 5.4e-27 125.6 248 37.9
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 7.1e-27 125.2 229 38.9
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 7.1e-27 125.2 236 39.8
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 9.3e-27 124.8 228 39.0
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 9.3e-27 124.8 96 63.5
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.6e-26 124.0 247 35.2
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.6e-26 124.0 243 38.3
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 2.7e-26 123.2 235 38.3
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 3.5e-26 122.9 250 38.0
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 4.6e-26 122.5 214 39.7
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 4.6e-26 122.5 242 38.0
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.3e-25 120.9 256 37.5
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.3e-25 120.9 242 37.6
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 2.3e-25 120.2 251 39.0
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 2.3e-25 120.2 251 39.0
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 3.0e-25 119.8 252 36.1
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 3.9e-25 119.4 223 38.1
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 3.9e-25 119.4 262 37.4
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 6.6e-25 118.6 254 36.2
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 6.6e-25 118.6 237 38.0
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 8.7e-25 118.2 258 36.4
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 1.5e-24 117.5 255 35.7
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.9e-24 117.1 239 36.8
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 2.5e-24 116.7 249 36.5
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 2.5e-24 116.7 249 36.5
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 7.3e-24 115.2 247 35.6
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 7.3e-24 115.2 247 35.6
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 9.6e-24 114.8 229 36.2
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.3e-23 114.4 249 36.5
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.3e-23 114.4 247 35.2
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 2.8e-23 113.2 245 36.7
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.1e-22 111.3 249 36.9
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.4e-22 110.9 249 36.9
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.4e-22 110.9 249 36.9
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 3.1e-22 109.8 251 35.1
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 2.0e-21 107.1 224 36.6
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 2.6e-21 106.7 250 37.2
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 2.6e-21 106.7 250 37.2
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 3.4e-21 106.3 256 34.0
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 7.6e-21 105.1 226 37.2
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 7.6e-21 105.1 256 34.4
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 7.6e-21 105.1 242 31.0
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 9.9e-21 104.8 253 35.2
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.7e-20 104.0 211 35.5
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.2e-20 103.6 239 33.9
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 3.8e-20 102.8 250 37.2
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.9e-19 100.5 250 31.2
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 7.1e-19 98.6 243 34.2
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 7.1e-19 98.6 203 36.0
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 2.7e-18 96.7 209 38.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 2.5e-16 90.1 280 29.3
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 3.3e-16 89.7 257 30.7
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.2e-12 77.0 156 34.0
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.2e-12 77.0 156 34.0
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.0e-09 68.2 187 34.8
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.7e-09 65.5 184 33.2
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.3e-08 63.2 123 34.1
FvH4_6g23250 Fragaria vesca HOM05D004075 ORTHO05D004538 5.6e-08 62.4 66 51.5
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 9.6e-08 61.6 139 35.3
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 3.1e-06 56.6 92 39.1


User provided reference genes

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