Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 1.5e-59 232.6 120 100.0
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 2.3e-47 192.2 121 86.0
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 7.7e-43 177.2 122 80.3
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.4e-36 155.6 114 74.6
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 5.7e-30 134.4 110 70.0
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 6.1e-24 114.4 121 57.9
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.5e-19 98.2 121 48.8
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.0e-18 94.7 113 46.9
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 6.5e-18 94.4 65 75.4
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.5e-17 93.2 98 52.0
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.9e-17 92.8 98 52.0
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 2.5e-17 92.4 122 49.2
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 7.2e-17 90.9 114 44.7
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 9.4e-17 90.5 102 50.0
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.6e-16 89.7 97 49.5
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 2.7e-16 89.0 116 46.6
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 3.6e-16 88.6 74 58.1
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 3.6e-16 88.6 122 48.4
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 6.1e-16 87.8 113 46.9
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 8.0e-16 87.4 113 46.0
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 8.0e-16 87.4 112 50.9
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.0e-15 87.0 111 46.8
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.0e-15 87.0 59 72.9
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 1.0e-15 87.0 127 44.9
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 1.4e-15 86.7 122 48.4
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.3e-15 85.9 63 63.5
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.3e-15 85.9 63 63.5
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 2.3e-15 85.9 80 57.5
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.3e-15 85.9 80 57.5
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 3.0e-15 85.5 77 55.8
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 3.0e-15 85.5 114 50.0
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 5.2e-15 84.7 67 65.7
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 5.2e-15 84.7 121 45.5
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 8.8e-15 84.0 65 64.6
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 8.8e-15 84.0 91 50.5
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.2e-14 83.6 110 41.8
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.5e-14 83.2 105 44.8
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 2.6e-14 82.4 114 42.1
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 2.6e-14 82.4 81 56.8
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 4.4e-14 81.6 64 60.9
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 4.4e-14 81.6 110 41.8
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 7.5e-14 80.9 113 45.1
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 7.5e-14 80.9 120 43.3
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 7.5e-14 80.9 117 37.6
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 7.5e-14 80.9 126 41.3
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 7.5e-14 80.9 106 46.2
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.3e-13 80.1 132 38.6
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.7e-13 79.7 119 41.2
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 1.7e-13 79.7 112 39.3
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 2.2e-13 79.3 82 53.7
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 2.2e-13 79.3 78 57.7
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 2.8e-13 79.0 103 43.7
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 3.7e-13 78.6 87 48.3
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 4.8e-13 78.2 107 43.0
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 6.3e-13 77.8 90 46.7
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 6.3e-13 77.8 114 39.5
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 8.3e-13 77.4 107 43.0
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 8.3e-13 77.4 51 72.5
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.1e-12 77.0 81 49.4
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.1e-12 77.0 88 47.7
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 1.1e-12 77.0 61 62.3
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.4e-12 76.6 87 47.1
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 1.4e-12 76.6 95 43.2
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 1.4e-12 76.6 121 43.8
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 1.4e-12 76.6 124 39.5
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.4e-12 76.6 120 43.3
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 1.4e-12 76.6 133 39.1
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.8e-12 76.3 58 65.5
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 1.8e-12 76.3 53 69.8
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 2.4e-12 75.9 54 68.5
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 2.4e-12 75.9 81 49.4
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.4e-12 75.9 124 37.9
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 2.4e-12 75.9 58 58.6
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.1e-12 75.5 81 49.4
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.1e-12 75.5 124 37.9
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 3.1e-12 75.5 67 56.7
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.1e-12 75.5 101 43.6
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 3.1e-12 75.5 87 43.7
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 3.1e-12 75.5 101 43.6
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 4.1e-12 75.1 135 42.2
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.1e-12 75.1 81 49.4
Medtr7g092040 Medicago truncatula HOM05D031557 ORTHO05D030146 4.1e-12 75.1 97 49.5
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.4e-12 74.7 124 37.9
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 5.4e-12 74.7 120 41.7
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 5.4e-12 74.7 101 41.6
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 7.0e-12 74.3 118 44.1
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 7.0e-12 74.3 105 43.8
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 7.0e-12 74.3 115 41.7
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 9.1e-12 73.9 51 62.7
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 9.1e-12 73.9 51 62.7
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 9.1e-12 73.9 51 62.7
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 9.1e-12 73.9 105 40.0
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.2e-11 73.6 110 42.7
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.2e-11 73.6 81 48.1
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.2e-11 73.6 126 39.7
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.6e-11 73.2 75 53.3
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.6e-11 73.2 51 62.7
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 2.0e-11 72.8 52 59.6
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.0e-11 72.8 57 64.9
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 2.7e-11 72.4 67 53.7
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 3.5e-11 72.0 52 63.5
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.5e-11 72.0 128 38.3
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 3.5e-11 72.0 113 41.6
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 4.5e-11 71.6 85 48.2
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 4.5e-11 71.6 51 60.8
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 4.5e-11 71.6 51 60.8
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.5e-11 71.6 49 59.2
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 5.9e-11 71.2 111 42.3
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.9e-11 71.2 128 38.3
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 5.9e-11 71.2 63 50.8
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 7.7e-11 70.9 55 56.4
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 7.7e-11 70.9 128 37.5
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 1.0e-10 70.5 54 57.4
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 1.0e-10 70.5 54 57.4
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 1.0e-10 70.5 54 57.4
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 1.0e-10 70.5 54 57.4
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.0e-10 70.5 128 36.7
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 1.0e-10 70.5 59 54.2
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 1.0e-10 70.5 94 38.3
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.3e-10 70.1 56 58.9
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.3e-10 70.1 52 61.5
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.7e-10 69.7 50 64.0
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 2.3e-10 69.3 95 41.1
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 2.3e-10 69.3 109 42.2
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.9e-10 68.9 53 56.6
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 2.9e-10 68.9 95 41.1
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 3.8e-10 68.6 54 55.6
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 3.8e-10 68.6 76 47.4
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 5.0e-10 68.2 49 63.3
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 5.0e-10 68.2 50 62.0
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 5.0e-10 68.2 110 41.8
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-09 67.0 54 55.6
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.1e-09 67.0 95 38.9
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.9e-09 66.2 54 55.6
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 1.9e-09 66.2 125 39.2
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.5e-09 65.9 105 39.0
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.3e-09 65.5 51 60.8
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.2e-09 65.1 95 40.0
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 5.5e-09 64.7 61 47.5
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 5.5e-09 64.7 61 47.5
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.5e-09 64.7 115 39.1
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 7.2e-09 64.3 49 61.2
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 9.5e-09 63.9 51 58.8
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 9.5e-09 63.9 112 34.8
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 9.5e-09 63.9 112 34.8
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 9.5e-09 63.9 112 34.8
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 9.5e-09 63.9 83 42.2
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.2e-08 63.5 50 60.0
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.2e-08 63.5 58 58.6
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.6e-08 63.2 51 54.9
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.6e-08 63.2 69 43.5
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 2.1e-08 62.8 108 37.0
Medtr7g091750 Medicago truncatula HOM05D031557 ORTHO05D030146 2.8e-08 62.4 90 46.7
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 2.8e-08 62.4 49 57.1
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 2.8e-08 62.4 91 45.1
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 3.6e-08 62.0 50 60.0
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 3.6e-08 62.0 50 60.0
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 3.6e-08 62.0 50 58.0
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 3.6e-08 62.0 61 50.8
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 4.7e-08 61.6 116 38.8
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 6.1e-08 61.2 106 38.7
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 6.1e-08 61.2 108 37.0
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 6.1e-08 61.2 108 37.0
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 8.0e-08 60.8 85 42.4
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 1.0e-07 60.5 97 38.1
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.0e-07 60.5 105 33.3
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.4e-07 60.1 97 37.1
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 3.0e-07 58.9 59 49.2
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 4.0e-07 58.5 45 57.8
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 6.8e-07 57.8 105 32.4
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 6.8e-07 57.8 105 32.4
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.8e-07 57.8 104 37.5
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.8e-07 57.8 104 37.5
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 8.9e-07 57.4 58 48.3
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 8.9e-07 57.4 58 48.3
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 1.5e-06 56.6 57 56.1
SEGI_11683 Sequoiadendron giganteum HOM05D011262 ORTHO05D012767 1.5e-06 56.6 72 43.1
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 1.5e-06 56.6 57 52.6
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.6e-06 55.8 39 64.1
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 2.6e-06 55.8 64 42.2
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 2.6e-06 55.8 64 42.2
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 4.4e-06 55.1 56 53.6


User provided reference genes

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