Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.8e-209 732.6 452 100.0
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 4.9e-175 618.2 402 85.8
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.5e-139 500.4 350 76.0
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 3.3e-131 472.6 323 77.1
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 9.1e-121 438.0 405 64.4
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.3e-115 419.5 448 56.2
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.3e-114 417.5 443 56.2
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 7.0e-113 411.8 416 57.7
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 5.7e-107 392.1 409 57.5
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 5.0e-103 379.0 435 53.8
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.1e-102 377.9 355 60.8
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 2.3e-100 370.2 428 53.0
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 5.7e-99 365.5 336 60.7
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 1.7e-98 364.0 424 52.4
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.7e-98 364.0 434 51.2
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 8.6e-95 351.7 438 49.5
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 2.8e-93 346.7 452 49.6
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.0e-92 344.7 423 50.6
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.0e-92 344.7 448 48.4
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 8.9e-92 341.7 450 47.6
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.2e-91 341.3 458 47.6
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 2.6e-91 340.1 459 48.8
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.3e-90 337.8 455 46.2
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.3e-90 337.8 447 48.8
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.7e-90 337.4 423 49.6
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.8e-90 336.7 453 46.6
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 4.9e-90 335.9 455 48.1
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 6.3e-90 335.5 453 46.8
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 8.3e-90 335.1 466 45.9
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 8.3e-90 335.1 441 47.6
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 1.1e-89 334.7 456 47.4
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.1e-89 334.7 456 46.7
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.4e-89 334.3 455 46.6
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.4e-89 334.3 453 45.9
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 9.2e-89 331.6 433 48.5
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.2e-88 331.3 456 46.7
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.5e-88 329.7 465 46.2
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 4.5e-88 329.3 454 46.9
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 4.5e-88 329.3 425 48.7
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 5.9e-88 328.9 306 59.5
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 5.9e-88 328.9 437 48.1
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 5.9e-88 328.9 466 46.6
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 3.8e-87 326.2 449 46.8
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 5.0e-87 325.9 422 48.8
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.5e-86 323.6 428 49.8
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 3.3e-86 323.2 426 48.1
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.3e-86 323.2 366 50.5
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 4.3e-86 322.8 450 46.7
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 9.5e-86 321.6 460 47.8
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.2e-85 321.2 466 45.9
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 1.6e-85 320.9 435 47.4
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.6e-85 320.9 455 48.4
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 3.6e-85 319.7 436 45.2
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.4e-84 317.8 439 45.8
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.1e-84 316.6 436 47.5
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 8.9e-84 315.1 359 51.0
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.5e-83 314.3 356 52.5
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 9.8e-83 311.6 421 47.7
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.3e-82 311.2 447 45.9
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.7e-82 310.8 462 43.1
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 2.9e-82 310.1 450 46.0
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 4.9e-82 309.3 421 47.0
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 6.4e-82 308.9 459 44.4
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 8.3e-82 308.5 421 48.0
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.3e-82 308.5 425 47.3
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.4e-81 307.8 418 46.9
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 7.0e-81 305.4 436 45.2
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.2e-81 305.1 461 45.1
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.0e-80 303.9 417 47.0
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 4.6e-80 302.8 428 47.7
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.0e-79 301.6 420 46.2
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.3e-79 300.4 418 45.9
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 3.0e-79 300.1 358 50.3
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.0e-79 300.1 418 45.5
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.9e-79 299.7 431 45.9
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 6.6e-79 298.9 487 43.1
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 2.5e-78 297.0 358 49.7
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 3.3e-78 296.6 326 53.4
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 5.6e-78 295.8 427 45.2
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.6e-77 294.3 361 49.3
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 6.2e-77 292.4 429 46.2
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 8.0e-77 292.0 403 48.1
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.4e-76 291.2 359 50.1
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 1.4e-76 291.2 372 48.9
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.8e-76 290.8 415 46.7
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.8e-76 290.8 415 46.7
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.8e-76 290.8 415 46.7
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.2e-75 288.1 353 48.2
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.0e-75 287.3 359 47.9
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 2.6e-75 287.0 429 44.3
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.3e-74 284.6 438 42.5
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.3e-74 284.6 351 49.6
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.7e-74 284.3 359 50.1
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.7e-74 284.3 379 48.5
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.2e-74 283.9 438 44.3
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 2.9e-74 283.5 427 43.3
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 8.3e-74 282.0 356 48.3
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-73 281.6 342 50.3
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.1e-73 281.6 342 50.3
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.1e-73 281.6 342 50.3
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 2.4e-73 280.4 440 44.3
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.2e-73 280.0 480 41.9
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 7.0e-73 278.9 418 45.7
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 7.0e-73 278.9 440 44.1
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.2e-72 278.1 416 44.7
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 2.3e-71 273.9 418 45.0
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 2.3e-71 273.9 370 46.2
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 1.1e-70 271.6 453 41.1
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 3.3e-70 270.0 462 41.1
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 5.6e-70 269.2 452 41.6
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 7.3e-70 268.9 477 39.4
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 7.3e-70 268.9 372 46.2
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.6e-69 267.7 438 41.8
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.1e-69 265.4 391 41.9
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 1.8e-68 264.2 430 41.4
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 4.0e-68 263.1 447 42.5
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 4.0e-68 263.1 391 45.0
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 2.6e-67 260.4 420 44.5
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 2.6e-67 260.4 420 44.5
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 2.2e-66 257.3 415 44.8
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 3.7e-66 256.5 412 42.5
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 5.4e-65 252.7 352 45.5
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 9.2e-65 251.9 466 39.1
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.6e-64 249.6 364 42.6
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 3.0e-63 246.9 415 40.5
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.1e-62 245.0 395 40.5
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.9e-62 244.2 311 47.3
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.1e-61 240.7 378 40.7
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 8.1e-61 238.8 377 41.4
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.4e-57 227.3 340 40.0
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.1e-54 218.4 431 37.8
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.8e-53 213.0 318 41.2
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 6.2e-53 212.6 453 35.1
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.1e-52 210.3 227 54.2
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.4e-51 206.5 361 38.2
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.1e-49 201.8 255 49.0
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 2.4e-49 200.7 360 37.2
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 2.1e-48 197.6 296 43.9
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 8.1e-45 185.7 458 33.2
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.2e-41 173.7 165 56.4
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.2e-41 173.3 165 58.2
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.1e-37 161.0 526 28.7
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.1e-37 161.0 526 28.7
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.0e-31 142.1 290 33.8
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.7e-31 139.4 430 28.8
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.7e-29 133.7 215 37.7
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.4e-28 131.0 293 34.1
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.1e-28 130.6 486 27.0
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.5e-27 126.7 411 28.2
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.4e-25 121.7 533 25.9
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.7e-24 117.5 208 35.1
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.1e-23 113.2 203 34.5
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 4.8e-21 106.7 329 27.1
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.8e-21 106.7 321 27.4
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 5.3e-20 103.2 122 44.3
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.1e-16 91.3 94 47.9
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.0e-15 89.0 161 40.4
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 2.0e-11 74.7 62 66.1
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.9e-10 70.9 80 43.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 2.1e-08 64.7 142 34.5
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.0e-07 62.4 66 42.4
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 6.7e-07 59.7 84 38.1


User provided reference genes

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