Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 5.0e-290 1000.3 494 100.0
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 6.6e-274 946.8 475 97.1
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 7.8e-267 923.3 475 94.5
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 1.2e-264 916.0 475 93.9
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 2.7e-259 898.3 476 90.1
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 5.6e-257 890.6 475 89.7
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 1.1e-255 886.3 475 89.3
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 1.2e-254 882.9 475 89.5
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 2.0e-254 882.1 475 89.9
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 3.5e-251 871.3 475 89.3
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 1.9e-249 865.5 475 88.8
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 1.9e-249 865.5 476 87.4
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 5.3e-231 804.3 483 81.4
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 6.9e-231 803.9 481 81.7
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 2.0e-230 802.4 481 81.3
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 3.4e-230 801.6 481 80.9
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 8.4e-229 797.0 481 81.1
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 3.2e-228 795.0 482 80.1
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 4.2e-228 794.7 481 80.5
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 5.5e-228 794.3 481 80.7
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 1.2e-227 793.1 481 80.2
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 1.2e-227 793.1 481 80.5
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 2.7e-227 792.0 482 79.9
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 3.5e-227 791.6 481 79.6
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 4.6e-227 791.2 481 80.0
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 6.0e-227 790.8 481 79.8
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 6.0e-227 790.8 482 80.3
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 6.0e-227 790.8 481 79.6
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.0e-226 790.0 482 79.3
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 1.3e-226 789.6 482 78.8
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 1.3e-226 789.6 483 80.1
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 1.8e-226 789.3 481 79.8
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 1.8e-226 789.3 481 79.8
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 2.3e-226 788.9 481 80.0
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 3.0e-226 788.5 482 80.5
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 3.0e-226 788.5 483 79.9
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 8.7e-226 786.9 483 80.1
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 1.5e-225 786.2 481 80.2
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 2.5e-225 785.4 481 79.8
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 4.3e-225 784.6 481 80.0
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 7.4e-225 783.9 481 80.2
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 7.4e-225 783.9 481 79.8
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 1.3e-224 783.1 477 79.9
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.3e-224 783.1 481 79.4
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 2.1e-224 782.3 476 80.5
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 1.1e-223 780.0 481 79.8
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 3.1e-223 778.5 482 78.6
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 9.0e-223 776.9 512 75.2
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.5e-222 776.2 481 79.2
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 2.0e-222 775.8 483 79.3
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.6e-222 775.4 481 79.4
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 3.4e-222 775.0 481 79.0
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 7.6e-222 773.9 481 79.0
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 1.0e-221 773.5 481 78.4
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 1.3e-221 773.1 479 79.1
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 1.3e-221 773.1 481 78.8
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.3e-221 773.1 481 79.0
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.7e-221 772.7 481 79.0
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 6.5e-221 770.8 483 78.7
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 2.5e-220 768.8 478 79.1
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 3.2e-220 768.5 481 78.8
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 5.5e-220 767.7 481 79.0
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 9.3e-220 766.9 481 78.8
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 9.3e-220 766.9 481 78.8
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 1.6e-219 766.1 479 78.3
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.6e-219 766.1 482 77.6
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 4.6e-219 764.6 477 78.2
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.3e-218 763.1 482 77.6
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 3.0e-218 761.9 481 78.2
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 3.9e-218 761.5 481 77.5
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 3.9e-218 761.5 480 77.3
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 5.1e-218 761.1 479 77.7
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 5.1e-218 761.1 479 77.7
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 5.1e-218 761.1 481 78.0
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 2.5e-217 758.8 479 78.9
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 7.4e-217 757.3 486 76.7
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 9.7e-217 756.9 478 77.2
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.3e-216 756.5 476 77.9
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 1.6e-216 756.1 483 78.1
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 2.1e-216 755.7 427 84.5
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 2.1e-216 755.7 453 81.2
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 2.8e-216 755.4 475 78.5
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 3.7e-216 755.0 483 76.6
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 1.4e-215 753.1 481 76.9
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 1.5e-214 749.6 486 76.3
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 2.0e-214 749.2 441 81.9
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 3.4e-214 748.4 418 85.4
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 4.5e-214 748.0 482 76.3
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 2.9e-213 745.3 481 76.5
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 3.8e-213 745.0 481 75.9
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 5.0e-213 744.6 482 75.7
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 6.5e-213 744.2 476 77.3
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 1.1e-212 743.4 478 76.8
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 1.9e-212 742.7 477 76.3
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 2.5e-212 742.3 481 76.3
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 7.2e-212 740.7 478 76.4
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 1.2e-206 723.4 389 87.7
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 1.1e-204 716.8 481 74.4
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 4.4e-201 704.9 484 73.3
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 4.7e-195 684.9 422 75.6
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 1.0e-194 683.7 420 78.1
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 5.2e-194 681.4 482 71.0
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 1.5e-193 679.9 389 82.5
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 3.3e-193 678.7 424 76.7
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 6.3e-192 674.5 402 79.6
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 5.0e-189 664.8 391 79.3
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 5.3e-183 644.8 384 80.7
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 3.1e-175 619.0 390 74.4
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.1e-171 606.3 431 70.8
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 8.3e-168 594.3 480 65.0
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 5.6e-164 581.6 388 67.3
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 3.0e-162 575.9 395 65.6
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 2.0e-153 546.6 287 89.2
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 1.7e-152 543.5 286 89.5
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 6.6e-141 505.0 341 73.0
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 8.9e-138 494.6 301 77.7
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.5e-103 380.2 237 77.6
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.5e-102 376.3 262 70.6
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 7.0e-82 308.9 171 83.0
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.6e-62 243.4 196 62.2
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 2.4e-58 230.7 130 83.8
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 9.1e-58 228.8 136 80.1
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-55 221.9 133 78.2
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 6.1e-46 189.5 140 67.1
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 3.1e-37 160.6 158 55.7
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 9.2e-34 149.1 95 75.8
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 8.1e-30 136.0 105 61.0
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 2.0e-12 78.2 59 62.7
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 9.9e-12 75.9 284 26.8
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 7.1e-10 69.7 288 26.7
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 6.6e-08 63.2 155 28.4
PSO782G1764 Papaver somniferum HOM05D000776 ORTHO05D001624 5.6e-07 60.1 175 26.3
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 7.3e-07 59.7 161 26.1
PSO478G2983 Papaver somniferum HOM05D000776 ORTHO05D001624 7.3e-07 59.7 175 25.7
TPR.G12967 Trifolium pratense HOM05D000776 ORTHO05D001624 9.6e-07 59.3 164 26.8
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 1.3e-06 58.9 154 27.3
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.3e-06 58.9 134 28.4
BraA01t02620Z Brassica rapa HOM05D000776 ORTHO05D001624 1.6e-06 58.5 158 24.7
HanXRQChr17g0534881 Helianthus annuus HOM05D000776 ORTHO05D001624 2.8e-06 57.8 128 31.2
Psat7g036120 Pisum sativum HOM05D000776 ORTHO05D001624 3.6e-06 57.4 130 26.9
Haze_27503 Corylus avellana HOM05D000776 ORTHO05D002281 8.1e-06 56.2 159 28.3


User provided reference genes

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