Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 0.0e+00 1185.6 637 100.0
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 9.7e-286 986.5 634 84.4
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.2e-272 943.0 640 80.8
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 6.7e-271 937.2 640 80.5
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.0e-234 817.0 651 70.4
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 6.1e-232 807.7 629 72.8
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.3e-229 800.0 649 68.6
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 2.2e-229 799.3 641 69.1
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 9.2e-228 793.9 642 68.7
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.3e-221 773.5 645 67.1
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.8e-215 753.1 645 65.3
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.4e-207 726.9 618 66.2
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.5e-206 723.4 638 63.5
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.9e-197 692.6 642 60.9
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.6e-192 676.8 647 58.7
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.5e-190 670.2 640 59.8
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 4.5e-190 668.7 647 58.3
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 5.8e-190 668.3 643 59.7
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 2.2e-189 666.4 640 58.0
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.2e-189 666.4 650 56.0
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.1e-187 659.8 645 56.6
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 4.6e-187 658.7 650 56.0
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 3.7e-184 649.0 640 57.8
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 6.2e-184 648.3 651 57.9
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 1.2e-182 644.0 659 55.2
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 1.5e-182 643.7 647 56.3
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 2.2e-181 639.8 640 55.6
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 3.8e-181 639.0 647 54.4
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.4e-180 637.1 642 55.6
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.4e-180 637.1 642 55.6
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 4.2e-180 635.6 641 56.3
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.1e-179 633.3 636 56.6
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.5e-179 632.5 659 54.5
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.5e-179 632.5 659 54.5
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 7.9e-179 631.3 632 57.3
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.9e-178 629.0 659 54.2
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 3.9e-178 629.0 641 55.9
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.3e-177 625.5 660 53.9
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.3e-177 625.5 642 55.8
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 9.6e-177 624.4 659 53.9
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-176 624.0 659 54.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.7e-176 622.5 659 53.9
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 4.8e-176 622.1 646 54.2
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.4e-175 620.5 641 55.7
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 2.4e-175 619.8 636 55.3
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 5.3e-175 618.6 641 54.8
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.9e-175 618.2 659 53.6
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 7.6e-174 614.8 641 54.0
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.6e-171 607.1 611 55.8
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 4.6e-171 605.5 651 53.8
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 6.1e-171 605.1 649 54.5
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.3e-170 604.0 643 54.7
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 2.3e-170 603.2 648 54.0
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 6.3e-168 595.1 644 53.7
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.2e-166 590.9 654 52.6
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 3.4e-166 589.3 636 52.7
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 5.9e-166 588.6 644 51.9
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 2.9e-165 586.3 651 52.4
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.5e-164 583.2 334 94.3
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.2e-163 580.9 648 52.3
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 2.1e-163 580.1 648 52.6
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 2.1e-163 580.1 645 51.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.3e-162 576.6 657 51.8
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.5e-161 573.9 642 52.0
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 3.3e-161 572.8 660 50.3
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 9.7e-161 571.2 641 51.3
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 2.2e-160 570.1 643 50.5
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.3e-160 568.5 644 50.6
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 3.1e-159 566.2 647 50.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.2e-158 564.3 643 49.8
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 2.2e-157 560.1 642 50.8
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 2.5e-156 556.6 643 50.5
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 2.5e-156 556.6 634 50.9
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 3.9e-154 549.3 642 48.9
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 8.8e-154 548.1 645 49.1
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 4.4e-153 545.8 408 69.9
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 2.2e-152 543.5 643 49.5
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.8e-152 543.1 649 49.9
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 3.7e-152 542.7 655 49.9
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.8e-151 540.4 640 49.2
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 9.1e-151 538.1 658 47.7
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 4.5e-150 535.8 640 48.8
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.3e-149 534.3 642 48.4
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 5.0e-149 532.3 646 48.5
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 6.5e-149 531.9 642 48.8
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 8.5e-149 531.6 642 48.8
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-148 531.2 640 48.8
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.1e-147 526.9 646 49.2
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.8e-144 516.5 634 48.3
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 5.3e-143 512.3 644 46.0
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-142 510.8 605 50.1
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.6e-142 510.0 652 46.8
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 3.2e-140 503.1 586 50.9
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.8e-138 497.3 644 45.3
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.5e-137 494.2 649 45.1
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.6e-137 493.4 569 51.8
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 2.9e-133 479.9 647 45.4
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 5.5e-132 475.7 426 60.8
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 8.8e-130 468.4 602 46.8
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 4.4e-129 466.1 632 45.7
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 6.3e-128 462.2 639 45.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.4e-127 461.1 450 57.1
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 7.7e-126 455.3 450 57.3
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.6e-123 447.6 654 43.0
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 6.8e-122 442.2 408 59.6
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.1e-119 434.9 673 40.4
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.0e-117 428.3 671 39.3
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.8e-115 420.2 638 40.4
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.6e-115 419.9 642 40.2
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.3e-112 411.4 645 42.6
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 7.0e-111 405.6 668 39.1
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 1.2e-102 378.3 634 40.9
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 1.5e-100 371.3 511 42.7
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 5.8e-97 359.4 346 60.1
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 3.5e-94 350.1 635 39.2
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-93 348.2 637 38.5
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.2e-91 341.7 637 38.8
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.8e-91 340.5 634 38.6
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 8.1e-91 339.0 637 38.0
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-90 337.8 622 39.1
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-86 324.7 632 37.3
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 4.0e-82 310.1 641 35.9
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.4e-81 306.6 407 44.0
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 8.4e-80 302.4 617 36.6
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 3.2e-79 300.4 415 43.1
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 8.1e-75 285.8 621 34.9
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 5.8e-73 279.6 652 31.4
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 2.2e-72 277.7 311 55.3
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-68 265.4 620 34.0
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.7e-67 260.4 619 33.8
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-62 245.0 620 31.8
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-58 230.7 607 33.1
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-51 207.6 423 34.5
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 3.8e-48 197.2 679 29.2
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.2e-46 192.2 249 49.0
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.4e-45 188.7 460 33.5
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.7e-43 181.8 168 60.7
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-39 167.9 161 55.9
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 3.1e-34 151.0 113 69.9
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.6e-33 148.7 114 68.4
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 2.9e-32 144.4 119 64.7
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 6.5e-32 143.3 153 52.3
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 9.7e-28 129.4 116 59.5
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.4e-26 125.6 103 61.2
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 2.4e-26 124.8 96 68.8
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 5.3e-26 123.6 85 70.6
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 2.5e-23 114.8 93 65.6
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-23 114.4 374 30.5
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-23 114.4 158 44.3
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.0e-21 109.4 71 74.6
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-20 105.5 87 60.9
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 2.0e-20 105.1 87 59.8
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 7.5e-20 103.2 356 25.8
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-18 99.4 87 58.6
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.1e-18 99.4 80 61.2
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 1.8e-18 98.6 106 52.8
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 5.4e-18 97.1 128 45.3
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.7e-16 92.0 51 84.3
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.5e-15 89.0 144 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 7.2e-15 86.7 157 38.2
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-13 82.8 210 33.3
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 1.0e-13 82.8 210 33.3
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 4.0e-13 80.9 210 32.9
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 3.4e-12 77.8 75 53.3
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.4e-10 72.4 138 38.4
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-09 68.9 82 46.3
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 5.9e-09 67.0 94 39.4
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 2.3e-08 65.1 68 52.9
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 7.3e-07 60.1 53 56.6
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.3e-07 60.1 88 42.0
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 2.8e-06 58.2 50 56.0


User provided reference genes

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