Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G124801 Glycine max HOM05D005784 ORTHO05D004556 4.6e-55 217.6 108 100.0
Glyma.10G139300 Glycine max HOM05D005784 ORTHO05D007803 5.2e-14 81.3 42 85.7
Phvul.007G208100 Phaseolus vulgaris HOM05D005784 ORTHO05D007803 2.0e-13 79.3 42 83.3
VMungo0720G0010 Vigna mungo HOM05D005784 ORTHO05D007803 2.0e-13 79.3 42 83.3
Manes.05G007100 Manihot esculenta HOM05D005784 ORTHO05D007803 3.3e-13 78.6 42 81.0
FAN23G2435 Fragaria x ananassa HOM05D005784 ORTHO05D007803 5.7e-13 77.8 49 75.5
Glyma.02G006500 Glycine max HOM05D005784 ORTHO05D007803 7.4e-13 77.4 42 81.0
Ca_10232_v3 Cicer arietinum L. HOM05D005784 ORTHO05D007803 9.7e-13 77.0 42 78.6
Thhalv10028510m.g Eutrema salsugineum HOM05D005784 ORTHO05D007803 1.3e-12 76.6 42 78.6
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.3e-12 76.6 77 57.1
MELO3C026475.2 Cucumis melo HOM05D005784 ORTHO05D007803 1.7e-12 76.3 46 73.9
FAN26G2096 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.7e-12 76.3 60 63.3
Lalb_Chr06g0167151 Lupinus albus HOM05D005784 ORTHO05D007803 1.7e-12 76.3 42 78.6
AL6G51690 Arabidopsis lyrata HOM05D005784 ORTHO05D007803 2.2e-12 75.9 42 78.6
AT4G01660 Arabidopsis thaliana HOM05D005784 ORTHO05D007803 2.2e-12 75.9 42 78.6
BcaB01g02124 Brassica carinata HOM05D005784 ORTHO05D007803 2.2e-12 75.9 42 78.6
A09p01190 Brassica napus HOM05D005784 ORTHO05D007803 2.2e-12 75.9 42 78.6
BolC9t53062H Brassica oleracea HOM05D005784 ORTHO05D007803 2.2e-12 75.9 42 78.6
BraA09t35789Z Brassica rapa HOM05D005784 ORTHO05D007803 2.2e-12 75.9 42 78.6
FvH4_1g26110 Fragaria vesca HOM05D005784 ORTHO05D007803 2.2e-12 75.9 42 78.6
RcHm_v2.0_Chr3g0485611 Rosa chinensis HOM05D005784 ORTHO05D007803 2.2e-12 75.9 42 78.6
Gohir.D11G110800 Gossypium hirsutum HOM05D005784 ORTHO05D007803 2.8e-12 75.5 42 78.6
Gorai.007G118500 Gossypium raimondii HOM05D005784 ORTHO05D007803 2.8e-12 75.5 42 78.6
Medtr1g085610 Medicago truncatula HOM05D005784 ORTHO05D007803 3.7e-12 75.1 42 76.2
BcaC04g24079 Brassica carinata HOM05D005784 ORTHO05D007803 4.8e-12 74.7 42 76.2
C09p01280 Brassica napus HOM05D005784 ORTHO05D007803 4.8e-12 74.7 42 76.2
FAN19G2824 Fragaria x ananassa HOM05D005784 ORTHO05D007803 4.8e-12 74.7 55 67.3
Aa31LG5G1370 Aethionema arabicum HOM05D005784 ORTHO05D007803 6.3e-12 74.3 42 76.2
COL.COLO4_23104 Corchorus olitorius HOM05D005784 ORTHO05D007803 6.3e-12 74.3 40 82.5
Lalb_Chr02g0147261 Lupinus albus HOM05D005784 ORTHO05D007803 6.3e-12 74.3 42 76.2
Thecc.01G327300 Theobroma cacao HOM05D005784 ORTHO05D007803 6.3e-12 74.3 42 76.2
arahy.Tifrunner.gnm1.ann1.AZ9DWX Arachis hypogaea HOM05D005784 ORTHO05D007803 8.2e-12 73.9 42 76.2
Eucgr.A00993 Eucalyptus grandis HOM05D005784 ORTHO05D007803 8.2e-12 73.9 42 73.8
Prupe.3G001200 Prunus persica HOM05D005784 ORTHO05D007803 8.2e-12 73.9 42 76.2
QL09p037402 Quercus lobata HOM05D005784 ORTHO05D007803 8.2e-12 73.9 73 46.6
Sp6g01550 Schrenkiella parvula HOM05D005784 ORTHO05D007803 8.2e-12 73.9 42 76.2
Cfa004924 Carpinus fangiana HOM05D000351 ORTHO05D007803 1.1e-11 73.6 42 76.2
Dinv12073 Davidia involucrata HOM05D005784 ORTHO05D007803 1.1e-11 73.6 42 73.8
Gohir.A11G105900 Gossypium hirsutum HOM05D005784 ORTHO05D007803 1.1e-11 73.6 42 73.8
Potri.002G185400 Populus trichocarpa HOM05D005784 ORTHO05D007803 1.1e-11 73.6 42 76.2
Actinidia25875 Actinidia chinensis HOM05D005784 ORTHO05D007803 1.4e-11 73.2 42 73.8
CANSAT25G3716 Cannabis sativa HOM05D005784 ORTHO05D007803 1.4e-11 73.2 42 76.2
Psat6g157920 Pisum sativum HOM05D005784 ORTHO05D007803 1.4e-11 73.2 42 73.8
Rhsim01G0293700 Rhododendron simsii HOM05D005784 ORTHO05D007803 1.4e-11 73.2 41 75.6
GSVIVG01028229001 Vitis vinifera HOM05D005784 ORTHO05D007803 1.4e-11 73.2 42 73.8
CSS0010584 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D007803 1.8e-11 72.8 42 73.8
Lsat_1_v5_gn_8_167141 Lactuca sativa HOM05D005784 ORTHO05D007803 1.8e-11 72.8 73 47.9
TPR.G3030 Trifolium pratense HOM05D005784 ORTHO05D007803 1.8e-11 72.8 42 73.8
Carub.0006s3555 Capsella rubella HOM05D005784 ORTHO05D007803 2.4e-11 72.4 42 73.8
ClCG11G000360 Citrullus lanatus HOM05D005784 ORTHO05D007803 2.4e-11 72.4 44 72.7
MD09G1291600 Malus domestica HOM05D005784 ORTHO05D007803 2.4e-11 72.4 42 73.8
TAR362G0637 Trochodendron aralioides HOM05D005784 ORTHO05D007803 2.4e-11 72.4 42 73.8
TAR362G1337 Trochodendron aralioides HOM05D005784 ORTHO05D007803 2.4e-11 72.4 42 73.8
CsaV3_5G036980 Cucumis sativus L. HOM05D005784 ORTHO05D007803 3.1e-11 72.0 42 73.8
Duzib133G0630 Durio zibethinus HOM05D005784 ORTHO05D007803 3.1e-11 72.0 42 76.2
Lj5g0003944 Lotus japonicus HOM05D005784 ORTHO05D007803 3.1e-11 72.0 42 76.2
Nn4g25319 Nelumbo nucifera HOM05D005784 ORTHO05D007803 3.1e-11 72.0 42 73.8
Ciclev10019335m.g Citrus clementina HOM05D005784 ORTHO05D007803 4.1e-11 71.6 42 73.8
DCAR_005710 Daucus carota HOM05D005784 ORTHO05D007803 4.1e-11 71.6 44 72.7
Cpa.g.sc57.39 Carica papaya HOM05D005784 ORTHO05D007803 5.3e-11 71.2 41 75.6
CiPaw.08G082400 Carya illinoinensis HOM05D005784 ORTHO05D007803 5.3e-11 71.2 42 71.4
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 5.3e-11 71.2 42 69.0
Atru.chr5.839 Acer truncatum HOM05D005784 ORTHO05D007803 7.0e-11 70.9 42 71.4
Aqoxy5G02861 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 7.0e-11 70.9 42 73.8
CAN.G179.27 Capsicum annuum HOM05D005784 ORTHO05D007803 7.0e-11 70.9 42 71.4
Cc01_g21730 Coffea canephora HOM05D005784 ORTHO05D007803 7.0e-11 70.9 42 71.4
Solyc01g068640.3 Solanum lycopersicum HOM05D005784 ORTHO05D007803 7.0e-11 70.9 42 71.4
Sopen01g030570 Solanum pennellii HOM05D005784 ORTHO05D007803 7.0e-11 70.9 42 71.4
AagrBONN_evm.TU.Sc2ySwM_228.4566 Anthoceros agrestis HOM05D005784 ORTHO05D007803 9.1e-11 70.5 42 71.4
AUR62035184 Chenopodium quinoa HOM05D005784 ORTHO05D007803 9.1e-11 70.5 42 71.4
AUR62043318 Chenopodium quinoa HOM05D005784 ORTHO05D007803 9.1e-11 70.5 42 71.4
Migut.D00007 Erythranthe guttata HOM05D005784 ORTHO05D007803 9.1e-11 70.5 42 71.4
Migut.N00893 Erythranthe guttata HOM05D005784 ORTHO05D007803 9.1e-11 70.5 42 71.4
PGR042G0128 Punica granatum HOM05D005784 ORTHO05D007803 9.1e-11 70.5 42 69.0
Sed0007139 Sechium edule HOM05D005784 ORTHO05D007803 9.1e-11 70.5 42 69.0
EL10Ac1g01825 Beta vulgaris HOM05D005784 ORTHO05D007803 1.2e-10 70.1 72 50.0
Peaxi162Scf00309g00620 Petunia axillaris HOM05D005784 ORTHO05D007803 1.2e-10 70.1 42 71.4
unitig_90.g27449 Utricularia gibba HOM05D001090 ORTHO05D007803 1.2e-10 70.1 42 71.4
Nitab4.5_0008825g0010 Nicotiana tabacum HOM05D005784 ORTHO05D007803 1.6e-10 69.7 42 69.0
THA.LOC104815912 Tarenaya hassleriana HOM05D005784 ORTHO05D007803 1.6e-10 69.7 42 69.0
Mapoly0064s0089 Marchantia polymorpha HOM05D005784 ORTHO05D007803 2.0e-10 69.3 42 71.4
CDE09G0629 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 2.6e-10 68.9 42 69.0
Aqoxy2G02413 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 3.5e-10 68.6 42 69.0
Nitab4.5_0003092g0090 Nicotiana tabacum HOM05D005784 ORTHO05D007803 3.5e-10 68.6 42 69.0
CARHR250010 Cardamine hirsuta HOM05D005784 ORTHO05D007803 4.5e-10 68.2 42 71.4
Os01g0318700 Oryza sativa ssp. japonica HOM05D005784 ORTHO05D007803 4.5e-10 68.2 42 69.0
TWI59G1466 Tripterygium wilfordii HOM05D005784 ORTHO05D007803 4.5e-10 68.2 42 69.0
ATR0693G326 Amborella trichopoda HOM05D005784 ORTHO05D007803 5.9e-10 67.8 42 66.7
HanXRQChr06g0167951 Helianthus annuus HOM05D005784 ORTHO05D007803 5.9e-10 67.8 42 69.0
Lj1C6G5 Lonicera japonica HOM05D005784 ORTHO05D007803 5.9e-10 67.8 40 72.5
Sc05g0000040 Simmondsia chinensis HOM05D005784 ORTHO05D007803 5.9e-10 67.8 42 66.7
MSTRG.18053 Avicennia marina HOM05D005784 ORTHO05D007803 7.7e-10 67.4 42 69.0
SHI19975 Sapria himalayana HOM05D005784 ORTHO05D000023 1.0e-09 67.0 42 66.7
MBI18_g03858_MAGBIO Magnolia biondii HOM05D005784 ORTHO05D007803 1.3e-09 66.6 42 66.7
Oeu052593.2 Olea europaea HOM05D005784 ORTHO05D007803 1.3e-09 66.6 41 68.3
PSO170G5067 Papaver somniferum HOM05D005784 ORTHO05D007803 1.3e-09 66.6 42 69.0
PSO357G0013 Papaver somniferum HOM05D005784 ORTHO05D007803 1.3e-09 66.6 42 69.0
SMO146G0128 Selaginella moellendorffii HOM05D005784 ORTHO05D007803 1.3e-09 66.6 44 68.2
SEGI_33686 Sequoiadendron giganteum HOM05D005784 ORTHO05D007803 1.3e-09 66.6 59 55.9
SGA_v2.0_scaffold417G51242 Striga asiatica HOM05D005784 ORTHO05D007803 1.3e-09 66.6 46 65.2
DCAR_002944 Daucus carota HOM05D005784 ORTHO05D007803 3.8e-09 65.1 38 73.7
Zm00001eb340520 Zea mays HOM05D005784 ORTHO05D007803 6.5e-09 64.3 42 64.3
HPP92_017034 Vanilla planifolia HOM05D005784 ORTHO05D007803 1.5e-08 63.2 42 59.5
HPP92_016969 Vanilla planifolia HOM05D005784 ORTHO05D007803 1.9e-08 62.8 42 59.5
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 2.5e-08 62.4 40 80.0
PRCOL_00004655 Prasinoderma coloniale HOM05D005784 ORTHO05D007803 4.2e-08 61.6 56 50.0
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 4.2e-08 61.6 40 80.0
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 5.5e-08 61.2 40 80.0
MCO09G446 Micromonas commoda HOM05D005784 ORTHO05D007803 2.1e-07 59.3 42 57.1
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 2.7e-07 58.9 38 78.9
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 4.7e-07 58.2 40 72.5
Cre10.g429800 Chlamydomonas reinhardtii HOM05D005784 ORTHO05D007803 6.1e-07 57.8 44 50.0
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.0e-06 57.0 40 72.5
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 1.4e-06 56.6 36 80.6
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 1.8e-06 56.2 40 72.5
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 3.0e-06 55.5 40 70.0
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 3.0e-06 55.5 40 70.0
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 4.0e-06 55.1 32 87.5
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 4.0e-06 55.1 38 76.3
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 4.0e-06 55.1 38 76.3
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 4.0e-06 55.1 38 76.3
Cfa022580 Carpinus fangiana HOM05D005784 ORTHO05D007803 5.2e-06 54.7 42 50.0
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 5.2e-06 54.7 38 76.3
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 5.2e-06 54.7 38 76.3
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 5.2e-06 54.7 40 67.5
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 5.2e-06 54.7 41 68.3
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 5.2e-06 54.7 38 76.3
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 8.8e-06 53.9 38 73.7
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 8.8e-06 53.9 32 87.5
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 8.8e-06 53.9 38 73.7
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 8.8e-06 53.9 38 73.7
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 8.8e-06 53.9 38 73.7
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 8.8e-06 53.9 38 73.7
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 8.8e-06 53.9 38 73.7
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 8.8e-06 53.9 38 73.7
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 8.8e-06 53.9 34 82.4


User provided reference genes

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