Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 2.3e-207 725.3 367 100.0
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 2.2e-173 612.5 365 85.8
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 7.8e-171 604.0 362 84.8
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 1.1e-145 520.4 365 72.1
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 2.2e-141 506.1 360 73.3
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 3.8e-141 505.4 360 71.9
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 6.4e-141 504.6 360 73.3
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 5.4e-140 501.5 365 71.0
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 9.3e-140 500.7 362 71.3
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 9.9e-134 480.7 427 61.6
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 3.4e-118 429.1 418 59.6
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 3.8e-109 399.1 366 58.2
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 4.2e-108 395.6 366 56.6
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 1.5e-105 387.1 360 56.7
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 4.3e-105 385.6 363 56.7
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 2.0e-102 376.7 340 57.9
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 3.4e-102 375.9 357 56.6
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 3.8e-101 372.5 364 55.5
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 1.1e-100 370.9 355 56.1
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 3.2e-100 369.4 357 54.6
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.2e-99 367.5 363 54.8
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 4.6e-99 365.5 363 54.5
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.8e-98 363.6 363 54.5
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.9e-98 362.5 360 54.2
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 8.8e-98 361.3 360 53.9
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.5e-97 360.5 363 53.2
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 2.6e-97 359.8 361 54.8
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 2.6e-97 359.8 364 53.6
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 7.4e-97 358.2 362 55.0
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 2.2e-96 356.7 368 52.2
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 1.1e-95 354.4 359 53.5
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 1.4e-95 354.0 250 71.2
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 2.0e-94 350.1 354 55.1
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 2.2e-93 346.7 361 51.2
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 2.2e-93 346.7 360 51.9
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 2.9e-93 346.3 317 58.0
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 3.8e-93 345.9 360 55.0
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 8.5e-93 344.7 364 51.9
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 1.4e-92 344.0 363 53.4
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 2.5e-92 343.2 332 55.1
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 4.2e-92 342.4 362 52.2
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 7.2e-92 341.7 322 57.1
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 7.2e-92 341.7 333 55.0
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.6e-91 340.5 325 56.9
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 2.1e-91 340.1 362 53.0
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 2.3e-90 336.7 363 50.1
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 3.0e-90 336.3 289 58.5
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 6.7e-90 335.1 362 51.4
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.1e-89 334.3 367 52.3
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 1.5e-89 334.0 360 53.1
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 2.6e-89 333.2 360 51.4
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 7.4e-89 331.6 280 57.9
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 7.4e-89 331.6 360 51.1
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 1.3e-88 330.9 364 51.6
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 1.7e-88 330.5 357 50.4
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 8.2e-88 328.2 329 53.5
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 4.5e-86 322.4 366 49.5
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 4.5e-86 322.4 346 49.7
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 5.9e-86 322.0 276 57.2
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 5.9e-86 322.0 251 65.3
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 2.2e-85 320.1 280 56.8
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 8.5e-85 318.2 367 48.8
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 4.2e-84 315.8 360 49.7
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 2.1e-83 313.5 420 44.0
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 6.1e-83 312.0 286 53.8
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 8.0e-83 311.6 361 50.4
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 1.4e-82 310.8 281 55.2
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 8.8e-82 308.1 361 49.0
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 6.3e-80 302.0 296 52.4
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 5.9e-78 295.4 331 50.5
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 2.2e-77 293.5 367 47.7
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 1.1e-76 291.2 372 47.0
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 1.2e-75 287.7 276 51.8
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 4.7e-75 285.8 276 53.3
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 2.3e-74 283.5 274 51.5
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 2.3e-74 283.5 443 41.1
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 1.2e-73 281.2 352 45.5
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 2.6e-73 280.0 311 48.2
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 5.7e-73 278.9 296 50.0
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 4.8e-72 275.8 294 50.0
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 6.3e-72 275.4 203 64.0
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 6.3e-72 275.4 368 43.8
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 3.1e-71 273.1 367 44.1
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 1.6e-70 270.8 292 48.3
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 2.3e-66 256.9 370 44.9
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 2.4e-63 246.9 261 52.9
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 7.0e-63 245.4 269 52.0
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 7.0e-63 245.4 425 38.1
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 4.3e-60 236.1 568 32.2
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 2.1e-59 233.8 267 50.6
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 3.6e-59 233.0 341 42.2
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 3.4e-57 226.5 362 41.4
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 5.4e-55 219.2 250 49.2
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 1.1e-47 194.9 264 45.5
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.7e-46 190.3 191 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 2.3e-45 187.2 271 39.1
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 8.3e-40 168.7 179 49.7
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 5.4e-39 166.0 210 44.8
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 1.7e-37 161.0 162 50.6
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-34 149.4 389 31.1
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 7.1e-31 139.0 120 62.5
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 1.6e-30 137.9 105 61.9
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 3.6e-27 126.7 128 57.0
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 1.2e-25 121.7 102 63.7
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 1.6e-22 111.3 235 36.6
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 1.7e-21 107.8 170 34.7
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 4.5e-17 93.2 113 45.1
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 1.9e-15 87.8 65 63.1
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 4.6e-14 83.2 72 61.1
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 4.6e-14 83.2 77 59.7
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 6.0e-14 82.8 232 26.7
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.1e-10 72.0 351 24.2
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.0e-09 67.8 44 68.2
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 1.7e-08 64.7 37 75.7
PRCOL_00003801 Prasinoderma coloniale HOM05D013257 ORTHO05D015313 3.8e-08 63.5 222 24.3
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 7.1e-07 59.3 46 63.0
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 1.2e-06 58.5 172 32.0
HPP92_022101 Vanilla planifolia HOM05D006946 ORTHO05D008634 6.0e-06 56.2 69 42.0


User provided reference genes

Program Settings