Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 1.8e-69 265.8 135 100.0
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 2.1e-65 252.3 135 94.8
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 2.8e-57 225.3 139 81.3
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 4.4e-55 218.0 137 81.0
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 4.9e-54 214.5 135 78.5
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 1.9e-53 212.6 136 79.4
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 3.5e-52 208.4 135 75.6
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 4.6e-52 208.0 137 78.8
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 4.6e-52 208.0 137 78.8
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 5.0e-51 204.5 132 75.0
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 6.6e-51 204.1 135 75.6
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 1.9e-50 202.6 110 93.6
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 3.3e-50 201.8 139 74.1
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 9.5e-50 200.3 136 74.3
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 2.8e-49 198.7 136 72.1
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 2.8e-49 198.7 136 73.5
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 4.7e-49 198.0 137 73.7
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 2.3e-48 195.7 137 70.8
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 4.0e-48 194.9 136 71.3
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 5.2e-48 194.5 136 70.6
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 1.2e-47 193.4 136 69.1
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.6e-47 192.2 136 69.1
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 2.6e-47 192.2 137 70.8
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 3.4e-47 191.8 136 70.6
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 3.4e-47 191.8 136 70.6
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 4.4e-47 191.4 136 72.1
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.7e-46 189.5 136 69.1
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.2e-46 189.1 136 69.1
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 2.2e-46 189.1 135 73.3
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 2.2e-46 189.1 138 71.7
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 3.7e-46 188.3 137 69.3
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.7e-46 188.3 137 69.3
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.9e-46 188.0 136 69.1
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.1e-45 186.8 136 68.4
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 1.9e-45 186.0 136 71.3
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.2e-45 185.3 135 71.9
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 3.2e-45 185.3 136 68.4
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 5.4e-45 184.5 136 67.6
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 9.2e-45 183.7 138 67.4
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.2e-44 183.3 136 69.1
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 2.7e-44 182.2 136 67.6
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 3.5e-44 181.8 136 67.6
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 3.5e-44 181.8 137 69.3
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 4.6e-44 181.4 137 67.9
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 6.0e-44 181.0 137 69.3
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 7.8e-44 180.6 138 64.5
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 7.8e-44 180.6 140 67.9
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 1.7e-43 179.5 138 67.4
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 2.3e-43 179.1 140 67.9
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 3.0e-43 178.7 138 68.8
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.0e-43 178.7 139 67.6
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 3.9e-43 178.3 137 67.9
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 3.9e-43 178.3 138 65.9
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 5.1e-43 177.9 137 65.0
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 5.1e-43 177.9 138 64.5
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 6.6e-43 177.6 137 65.0
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 6.6e-43 177.6 136 66.9
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 6.6e-43 177.6 135 65.9
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 8.6e-43 177.2 138 68.1
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 8.6e-43 177.2 137 67.2
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 1.5e-42 176.4 138 67.4
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 2.5e-42 175.6 136 66.9
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 2.5e-42 175.6 135 68.9
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 4.3e-42 174.9 137 65.0
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 4.3e-42 174.9 137 64.2
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 5.6e-42 174.5 139 63.3
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 7.3e-42 174.1 137 63.5
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 7.3e-42 174.1 136 66.2
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 1.2e-41 173.3 139 66.9
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 1.2e-41 173.3 137 62.0
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.8e-41 172.2 136 65.4
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 3.6e-41 171.8 136 64.0
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 3.6e-41 171.8 136 64.0
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 3.6e-41 171.8 107 79.4
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 8.1e-41 170.6 139 63.3
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 1.1e-40 170.2 134 62.7
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 1.8e-40 169.5 139 62.6
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 2.3e-40 169.1 140 64.3
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 2.3e-40 169.1 137 65.0
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 3.1e-40 168.7 136 64.0
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 4.0e-40 168.3 115 74.8
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 5.2e-40 167.9 136 61.8
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 8.9e-40 167.2 137 65.7
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.2e-39 166.8 139 62.6
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.5e-39 166.4 140 64.3
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 2.6e-39 165.6 138 60.9
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.6e-39 165.6 140 63.6
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.6e-39 165.6 154 61.0
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 3.4e-39 165.2 138 61.6
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 3.4e-39 165.2 141 63.8
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 5.8e-39 164.5 137 61.3
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 5.8e-39 164.5 137 61.3
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 5.8e-39 164.5 137 61.3
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 5.8e-39 164.5 137 61.3
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 5.8e-39 164.5 140 62.1
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 7.6e-39 164.1 138 63.8
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 7.6e-39 164.1 86 95.3
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.7e-38 162.9 137 59.9
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 1.7e-38 162.9 138 60.9
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 1.7e-38 162.9 126 67.5
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.7e-38 162.9 136 61.0
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 3.8e-38 161.8 139 61.9
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 3.8e-38 161.8 138 63.0
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 4.9e-38 161.4 136 55.9
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 6.4e-38 161.0 116 69.0
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 6.4e-38 161.0 138 60.1
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.1e-37 160.2 140 62.1
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 4.1e-37 158.3 209 47.4
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 5.4e-37 157.9 143 56.6
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.2e-36 156.8 129 62.0
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 3.5e-36 155.2 143 56.6
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 7.8e-36 154.1 104 71.2
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 3.9e-35 151.8 120 63.3
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 4.3e-34 148.3 130 60.8
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 5.6e-34 147.9 90 80.0
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 9.6e-34 147.1 144 56.2
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 1.2e-33 146.7 106 66.0
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 1.6e-33 146.4 168 51.2
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 2.8e-33 145.6 138 55.8
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 2.8e-33 145.6 146 53.4
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 8.1e-33 144.1 99 80.8
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 3.4e-31 138.7 89 73.0
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 6.4e-30 134.4 106 58.5
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.4e-29 133.3 124 58.1
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 1.2e-28 130.2 104 60.6
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 1.6e-28 129.8 89 66.3
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 6.0e-28 127.9 144 51.4
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 4.3e-26 121.7 70 80.0
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.3e-25 120.2 116 54.3
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.8e-24 116.3 130 53.1
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 4.0e-24 115.2 89 57.3
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 6.9e-24 114.4 88 67.0
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 3.4e-23 112.1 107 57.0
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.7e-22 109.8 111 48.6
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 1.4e-21 106.7 105 53.3
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 4.6e-20 101.7 74 64.9
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.5e-15 86.7 65 63.1
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 1.3e-14 83.6 69 65.2
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 4.8e-09 65.1 48 66.7
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 9.0e-08 60.8 36 77.8
THA.LOC104810987 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 9.0e-08 60.8 158 29.7
TPR.G12514 Trifolium pratense HOM05D002686 ORTHO05D003222 2.0e-07 59.7 157 31.2
Lj4g0026142 Lotus japonicus HOM05D002686 ORTHO05D003222 2.6e-07 59.3 141 31.9
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 3.4e-07 58.9 158 30.4
CAN.G1661.28 Capsicum annuum HOM05D002686 ORTHO05D003222 4.5e-07 58.5 95 36.8
AL6G32280 Arabidopsis lyrata HOM05D002686 ORTHO05D003222 5.8e-07 58.2 132 27.3
AT5G20720 Arabidopsis thaliana HOM05D002686 ORTHO05D003222 5.8e-07 58.2 132 27.3
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 5.8e-07 58.2 95 35.8
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 5.8e-07 58.2 95 35.8
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 1.0e-06 57.4 95 33.7
Duzib150G0982 Durio zibethinus HOM05D002686 ORTHO05D003222 1.0e-06 57.4 157 29.9
Os06g0196900 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 1.7e-06 56.6 122 36.1
Aa31LG1G13960 Aethionema arabicum HOM05D002686 ORTHO05D003222 2.9e-06 55.8 95 34.7
Carub.0006s1906 Capsella rubella HOM05D002686 ORTHO05D003222 2.9e-06 55.8 132 28.0
Thecc.09G072400 Theobroma cacao HOM05D002686 ORTHO05D003222 2.9e-06 55.8 157 29.9
arahy.Tifrunner.gnm1.ann1.5TSI9H Arachis hypogaea HOM05D002686 ORTHO05D003222 3.8e-06 55.5 140 31.4
Thhalv10014202m.g Eutrema salsugineum HOM05D002686 ORTHO05D003222 3.8e-06 55.5 127 29.1
Hund08835 Selenicereus undatus HOM05D002686 ORTHO05D003222 3.8e-06 55.5 124 33.1
arahy.Tifrunner.gnm1.ann1.XRWK6U Arachis hypogaea HOM05D002686 ORTHO05D003222 4.9e-06 55.1 151 30.5
BcaB05g22817 Brassica carinata HOM05D002686 ORTHO05D003222 4.9e-06 55.1 127 30.7
BcaC03g13794 Brassica carinata HOM05D002686 ORTHO05D003222 4.9e-06 55.1 126 29.4
BolC2t07068H Brassica oleracea HOM05D002686 ORTHO05D003222 4.9e-06 55.1 126 29.4
CARHR192090 Cardamine hirsuta HOM05D002686 ORTHO05D003222 4.9e-06 55.1 132 27.3
Ca_09316_v3 Cicer arietinum L. HOM05D002686 ORTHO05D003222 4.9e-06 55.1 132 33.3
Glyma.15G180900 Glycine max HOM05D002686 ORTHO05D003222 4.9e-06 55.1 95 36.8
Sc18g0002740 Simmondsia chinensis HOM05D002686 ORTHO05D003222 4.9e-06 55.1 95 34.7
Gohir.A06G078700 Gossypium hirsutum HOM05D002686 ORTHO05D003222 6.5e-06 54.7 95 34.7
Peaxi162Scf00928g00213 Petunia axillaris HOM05D002686 ORTHO05D003222 6.5e-06 54.7 95 36.8
Psat4g019040 Pisum sativum HOM05D002686 ORTHO05D003222 6.5e-06 54.7 156 30.1
PGSC0003DMG400002929 Solanum tuberosum HOM05D002686 ORTHO05D003222 6.5e-06 54.7 95 36.8
Zm00001eb373960 Zea mays HOM05D002686 ORTHO05D003222 6.5e-06 54.7 104 32.7
BcaB01g04773 Brassica carinata HOM05D002686 ORTHO05D003222 8.4e-06 54.3 95 31.6
A02p06460 Brassica napus HOM05D002686 ORTHO05D003222 8.4e-06 54.3 127 28.3
Glyma.09G072100 Glycine max HOM05D002686 ORTHO05D003222 8.4e-06 54.3 95 35.8
Os02g0781400 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 8.4e-06 54.3 95 33.7
Sopen12g004200 Solanum pennellii HOM05D002686 ORTHO05D003222 8.4e-06 54.3 95 35.8
THA.LOC104815076 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 8.4e-06 54.3 95 34.7


User provided reference genes

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