Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 8.2e-94 347.1 175 100.0
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 7.9e-89 330.5 175 93.7
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.1e-87 326.6 175 92.6
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 4.6e-81 304.7 181 86.2
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 5.7e-79 297.7 178 84.3
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.7e-78 296.2 178 85.4
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 5.3e-77 291.2 175 80.6
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 5.5e-74 281.2 176 81.8
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 9.4e-74 280.4 173 81.5
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 2.1e-73 279.3 175 81.1
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 2.7e-73 278.9 178 79.8
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.0e-72 276.9 175 80.0
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.0e-72 276.9 175 81.1
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.8e-72 276.2 178 79.2
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.8e-72 276.2 175 80.6
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 3.9e-72 275.0 175 81.1
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.9e-72 275.0 175 78.3
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 8.8e-72 273.9 178 79.2
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.1e-71 273.5 175 79.4
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.1e-71 273.5 175 79.4
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.1e-71 273.5 175 79.4
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 2.6e-71 272.3 175 79.4
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.3e-71 271.9 174 77.6
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 7.4e-71 270.8 175 78.3
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 9.7e-71 270.4 173 77.5
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.3e-70 270.0 176 79.0
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.7e-70 269.6 175 77.7
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 2.2e-70 269.2 176 78.4
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 2.2e-70 269.2 174 75.9
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 2.8e-70 268.9 175 77.7
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.8e-70 268.9 175 78.3
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 4.8e-70 268.1 175 77.1
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 4.8e-70 268.1 174 81.0
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 8.2e-70 267.3 173 76.3
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.1e-69 266.9 176 80.1
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.4e-69 265.8 176 77.3
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 4.1e-69 265.0 175 77.1
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 4.1e-69 265.0 175 77.7
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 5.3e-69 264.6 175 74.9
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.3e-69 264.6 176 76.7
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 5.3e-69 264.6 175 76.0
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 7.0e-69 264.2 175 77.1
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.2e-68 263.5 176 77.3
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.2e-68 263.5 175 76.6
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.5e-68 263.1 181 75.1
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 2.0e-68 262.7 176 73.9
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.6e-68 262.3 175 77.1
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 3.5e-68 261.9 161 80.1
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.7e-67 259.6 163 79.1
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 2.9e-67 258.8 173 75.1
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 3.8e-67 258.5 176 74.4
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 6.5e-67 257.7 171 77.8
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 6.5e-67 257.7 175 73.7
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 8.5e-67 257.3 176 72.2
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.9e-66 256.1 204 67.6
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.5e-66 255.8 175 72.6
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.5e-66 255.8 175 72.6
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.5e-66 255.8 175 73.7
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 2.5e-66 255.8 185 71.4
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 3.2e-66 255.4 161 78.3
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.2e-66 255.0 162 77.2
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.5e-66 254.6 175 71.4
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 5.5e-66 254.6 175 72.6
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 5.5e-66 254.6 175 72.6
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.5e-66 254.6 204 67.2
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.5e-66 254.6 204 67.2
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 5.5e-66 254.6 176 74.4
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 5.5e-66 254.6 200 69.5
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.2e-66 254.2 162 77.8
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 9.4e-66 253.8 175 71.4
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 9.4e-66 253.8 176 71.6
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 9.4e-66 253.8 172 73.3
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.2e-65 253.4 175 72.0
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.2e-65 253.4 175 72.6
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.2e-65 253.4 176 74.4
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.6e-65 253.1 175 71.4
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.6e-65 253.1 175 72.0
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 1.6e-65 253.1 172 76.2
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 2.1e-65 252.7 175 71.4
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.1e-65 252.7 162 76.5
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 2.1e-65 252.7 175 76.0
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 2.7e-65 252.3 162 76.5
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.7e-65 252.3 175 71.4
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.7e-65 252.3 175 72.0
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 3.6e-65 251.9 175 70.9
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 3.6e-65 251.9 175 72.0
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 6.1e-65 251.1 175 72.0
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 6.1e-65 251.1 175 72.0
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 6.1e-65 251.1 175 73.1
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 6.1e-65 251.1 165 76.4
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 5.2e-64 248.1 175 72.0
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 8.8e-64 247.3 172 72.1
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.1e-63 246.9 208 63.5
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.0e-63 246.1 176 71.0
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.4e-63 245.0 175 69.7
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 7.4e-63 244.2 173 69.9
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 3.7e-62 241.9 176 69.3
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.7e-62 241.9 222 61.3
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 4.8e-62 241.5 179 71.5
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.8e-62 241.5 162 75.3
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 6.3e-62 241.1 177 70.1
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 6.3e-62 241.1 169 69.8
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 7.0e-61 237.7 168 70.2
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 7.0e-61 237.7 168 70.2
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 2.6e-60 235.7 168 69.6
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 5.9e-60 234.6 169 68.0
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.9e-58 229.6 229 55.5
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.7e-57 225.7 139 80.6
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.5e-55 219.9 213 58.2
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 3.4e-55 218.8 267 50.2
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 3.4e-55 218.8 193 64.8
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 4.4e-55 218.4 146 73.3
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 9.8e-55 217.2 175 61.7
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.4e-53 211.5 120 85.0
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 4.5e-52 208.4 187 63.6
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 8.8e-48 194.1 176 61.9
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 5.7e-47 191.4 172 59.9
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 3.7e-46 188.7 113 78.8
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 3.3e-42 175.6 175 58.3
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 3.6e-41 172.2 137 62.0
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 5.2e-40 168.3 111 75.7
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 1.5e-39 166.8 139 55.4
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.1e-37 160.6 111 73.0
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 5.4e-37 158.3 119 68.9
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.2e-36 157.1 116 66.4
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 7.8e-36 154.5 100 77.0
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 1.7e-35 153.3 113 69.9
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.5e-34 149.4 135 50.4
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.6e-33 145.6 114 64.0
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 4.7e-33 145.2 120 65.0
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.4e-29 132.9 102 66.7
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 7.0e-29 131.3 105 65.7
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 3.3e-26 122.5 81 70.4
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 3.3e-26 122.5 81 70.4
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 8.1e-25 117.9 112 44.6
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.9e-22 109.4 63 85.7
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.9e-22 108.6 96 60.4
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.4e-21 106.3 86 67.4
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 2.4e-21 106.3 110 39.1
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 7.1e-21 104.8 104 45.2
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.2e-21 104.4 93 59.1
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.2e-20 104.0 64 79.7
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 1.7e-19 100.1 65 72.3
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 3.0e-19 99.4 61 77.0
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 5.6e-18 95.1 86 50.0
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 1.6e-17 93.6 106 41.5
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 2.8e-17 92.8 65 67.7
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 2.9e-14 82.8 136 34.6
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 4.1e-13 79.0 50 74.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.1e-12 76.6 104 46.2
Phvul.001G073900 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 3.4e-07 59.3 36 77.8
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 8.4e-06 54.7 32 81.2


User provided reference genes

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