Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 3.4e-65 251.5 129 100.0
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.4e-58 229.6 129 91.5
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 2.7e-54 215.3 129 83.7
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.3e-51 206.5 123 84.6
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 8.2e-51 203.8 123 82.9
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 7.0e-50 200.7 127 77.2
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 1.6e-49 199.5 120 80.0
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 2.6e-49 198.7 121 82.6
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.5e-49 198.4 127 76.4
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 4.5e-49 198.0 121 79.3
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 4.5e-49 198.0 121 79.3
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 5.9e-49 197.6 122 82.0
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 5.9e-49 197.6 120 81.7
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 5.9e-49 197.6 127 78.0
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.7e-49 197.2 123 79.7
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 7.7e-49 197.2 123 81.3
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.0e-48 196.8 121 80.2
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 80.2
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 78.5
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.7e-48 196.1 119 83.2
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.7e-48 196.1 120 80.8
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.2e-48 195.7 120 80.8
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 2.2e-48 195.7 119 80.7
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.2e-48 195.7 126 76.2
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.2e-48 195.7 127 75.6
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 2.9e-48 195.3 117 81.2
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 2.9e-48 195.3 123 78.9
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.9e-48 195.3 123 78.9
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 2.9e-48 195.3 126 77.0
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.9e-48 195.3 121 78.5
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.9e-48 195.3 121 79.3
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 2.9e-48 195.3 118 79.7
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 2.9e-48 195.3 120 80.0
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.8e-48 194.9 123 78.0
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 3.8e-48 194.9 121 79.3
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 5.0e-48 194.5 121 77.7
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 5.0e-48 194.5 120 79.2
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 6.5e-48 194.1 121 80.2
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 8.5e-48 193.7 123 76.4
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.1e-47 193.4 123 77.2
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.5e-47 193.0 127 74.0
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.5e-47 193.0 123 77.2
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.5e-47 193.0 125 76.8
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.5e-47 193.0 120 77.5
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.5e-47 193.0 125 75.2
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.9e-47 192.6 118 80.5
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.9e-47 192.6 121 77.7
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.5e-47 192.2 121 76.9
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.2e-47 191.8 127 74.8
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.2e-47 191.8 121 76.9
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 4.2e-47 191.4 123 75.6
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 5.5e-47 191.0 121 76.0
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 5.5e-47 191.0 123 75.6
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.5e-47 191.0 121 77.7
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 5.5e-47 191.0 121 77.7
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.5e-47 191.0 121 76.0
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 7.2e-47 190.7 119 79.0
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 7.2e-47 190.7 121 77.7
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 9.4e-47 190.3 121 76.9
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.6e-46 189.5 119 78.2
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.6e-46 189.5 125 75.2
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.6e-46 189.5 125 75.2
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.6e-46 189.5 125 75.2
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 2.1e-46 189.1 125 74.4
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 2.1e-46 189.1 125 74.4
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.1e-46 189.1 123 74.0
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 2.7e-46 188.7 124 73.4
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 2.7e-46 188.7 119 75.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.6e-46 188.3 123 75.6
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 3.6e-46 188.3 120 74.2
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 3.6e-46 188.3 120 75.0
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 4.7e-46 188.0 120 75.0
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 4.7e-46 188.0 124 73.4
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 8.0e-46 187.2 121 75.2
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.4e-45 186.4 116 77.6
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 1.4e-45 186.4 125 73.6
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 3.0e-45 185.3 120 76.7
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 5.2e-45 184.5 119 75.6
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.2e-44 183.3 116 76.7
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.5e-44 183.0 126 71.4
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.5e-44 183.0 126 73.8
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 2.0e-44 182.6 120 74.2
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 3.3e-44 181.8 114 77.2
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 7.5e-44 180.6 121 71.9
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 9.7e-44 180.3 120 72.5
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.7e-43 179.5 120 73.3
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.7e-43 179.5 125 71.2
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.2e-43 179.1 120 73.3
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 4.8e-43 177.9 123 68.3
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 4.8e-43 177.9 123 68.3
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.3e-43 177.6 125 73.6
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 6.3e-43 177.6 121 68.6
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 8.2e-43 177.2 120 72.5
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 4.1e-42 174.9 121 71.1
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 9.1e-42 173.7 123 66.7
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 9.1e-42 173.7 110 76.4
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 2.0e-41 172.6 121 73.6
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.5e-41 171.8 105 80.0
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 5.9e-41 171.0 108 79.6
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 5.9e-41 171.0 117 69.2
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 7.7e-41 170.6 120 70.8
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.1e-39 166.8 105 76.2
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.5e-39 166.4 119 71.4
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.5e-39 166.4 108 75.0
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 7.2e-39 164.1 119 64.7
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 9.4e-39 163.7 119 70.6
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.6e-38 161.8 120 67.5
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 3.6e-38 161.8 123 69.9
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.0e-37 160.2 120 67.5
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.0e-37 160.2 118 67.8
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 2.3e-37 159.1 98 81.6
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 4.0e-37 158.3 122 67.2
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 8.8e-37 157.1 98 80.6
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 8.8e-37 157.1 98 80.6
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.5e-36 156.4 122 65.6
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 4.4e-36 154.8 108 70.4
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 9.8e-36 153.7 123 63.4
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 8.3e-35 150.6 110 69.1
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 8.3e-35 150.6 120 66.7
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.8e-34 149.4 122 63.9
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.1e-34 148.7 99 74.7
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 9.1e-34 147.1 90 77.8
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 7.7e-33 144.1 97 73.2
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 1.0e-32 143.7 96 72.9
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.0e-32 143.7 100 69.0
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.5e-31 139.8 98 68.4
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.5e-31 139.8 98 68.4
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 9.5e-31 137.1 83 78.3
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.1e-30 136.0 98 71.4
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.1e-30 134.4 89 74.2
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 2.3e-29 132.5 107 63.6
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.0e-29 132.1 86 75.6
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.5e-28 129.8 80 73.8
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 5.7e-28 127.9 118 52.5
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 7.5e-28 127.5 129 55.0
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 1.8e-26 122.9 113 53.1
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 4.1e-26 121.7 123 56.1
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 5.4e-26 121.3 116 57.8
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.2e-25 120.2 84 71.4
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.6e-25 119.8 120 46.7
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 4.5e-25 118.2 88 61.4
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 7.8e-25 117.5 118 50.0
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 2.9e-24 115.5 125 51.2
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.6e-24 114.4 118 51.7
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 8.6e-24 114.0 114 49.1
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.1e-23 113.6 114 48.2
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 2.5e-23 112.5 118 50.0
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 7.3e-23 110.9 123 49.6
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.6e-22 109.8 114 47.4
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 2.8e-22 109.0 115 52.2
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 6.8e-21 104.4 76 76.3
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.2e-20 103.6 102 51.0
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 7.0e-18 94.4 61 73.8
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.7e-16 89.7 55 72.7
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 1.2e-09 67.0 69 52.2
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.1e-07 60.5 53 49.1
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 9.5e-07 57.4 34 73.5


User provided reference genes

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