Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 3.3e-80 301.6 146 100.0
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 4.5e-61 238.0 147 80.3
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 2.2e-28 129.4 136 52.9
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 9.4e-27 124.0 158 50.6
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 7.9e-26 120.9 154 50.0
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 5.1e-25 118.2 135 53.3
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 1.3e-23 113.6 154 44.8
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 8.2e-23 110.9 127 47.2
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 9.1e-22 107.5 120 50.0
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 3.8e-20 102.1 125 43.2
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.1e-19 100.5 125 44.0
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 2.5e-19 99.4 142 41.5
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 4.7e-18 95.1 151 35.8
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 7.4e-16 87.8 107 44.9
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 9.7e-16 87.4 131 40.5
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 1.3e-15 87.0 140 39.3
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 1.1e-14 84.0 126 40.5
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 1.1e-14 84.0 144 33.3
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 1.4e-14 83.6 158 36.7
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 4.1e-14 82.0 130 39.2
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 5.3e-14 81.6 137 38.7
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 7.0e-14 81.3 127 38.6
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 1.2e-13 80.5 153 32.7
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 1.2e-13 80.5 153 32.7
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 1.6e-13 80.1 132 35.6
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 2.0e-13 79.7 148 35.1
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 2.0e-13 79.7 153 32.7
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 2.0e-13 79.7 154 33.8
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 3.5e-13 79.0 132 37.9
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 5.9e-13 78.2 140 35.7
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 1.0e-12 77.4 136 36.8
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 1.0e-12 77.4 140 35.0
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 1.0e-12 77.4 117 36.8
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 1.3e-12 77.0 136 36.8
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 1.3e-12 77.0 141 36.2
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 1.3e-12 77.0 120 35.0
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 2.9e-12 75.9 137 34.3
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 3.8e-12 75.5 142 34.5
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 3.8e-12 75.5 140 34.3
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 5.0e-12 75.1 140 36.4
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 5.0e-12 75.1 130 35.4
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 6.5e-12 74.7 142 34.5
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 1.1e-11 73.9 130 31.5
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 1.5e-11 73.6 127 33.1
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.5e-11 73.6 123 36.6
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 1.5e-11 73.6 144 34.0
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 1.5e-11 73.6 149 32.9
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 1.9e-11 73.2 157 32.5
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 3.2e-11 72.4 134 34.3
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 5.5e-11 71.6 174 29.3
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 7.2e-11 71.2 175 29.1
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 7.2e-11 71.2 128 33.6
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 9.4e-11 70.9 149 32.9
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 9.4e-11 70.9 153 34.0
Aqoxy6G00297 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 1.6e-10 70.1 140 32.9
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 2.1e-10 69.7 149 32.2
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 2.1e-10 69.7 149 32.2
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 2.7e-10 69.3 69 44.9
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 3.6e-10 68.9 138 34.8
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 4.7e-10 68.6 126 35.7
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 4.7e-10 68.6 126 35.7
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 4.7e-10 68.6 119 35.3
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 4.7e-10 68.6 137 33.6
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 6.1e-10 68.2 148 30.4
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 6.1e-10 68.2 130 29.2
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 1.0e-09 67.4 124 32.3
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 1.4e-09 67.0 137 34.3
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 2.3e-09 66.2 139 30.9
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 2.3e-09 66.2 133 32.3
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 3.0e-09 65.9 140 30.7
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 4.0e-09 65.5 130 29.2
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 4.0e-09 65.5 80 40.0
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 6.7e-09 64.7 76 39.5
BolC3t13471H Brassica oleracea HOM05D007511 ORTHO05D003753 1.2e-08 63.9 111 36.0
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 1.5e-08 63.5 70 45.7
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 4.4e-08 62.0 141 31.9
A03p08430 Brassica napus HOM05D007511 ORTHO05D003753 5.7e-08 61.6 111 35.1
BraA03t10166Z Brassica rapa HOM05D007511 ORTHO05D003753 5.7e-08 61.6 111 35.1
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 7.5e-08 61.2 62 45.2
BcaB01g05209 Brassica carinata HOM05D007511 ORTHO05D003753 1.3e-07 60.5 111 35.1
C03p09830 Brassica napus HOM05D007511 ORTHO05D003753 1.3e-07 60.5 111 35.1
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 1.3e-07 60.5 134 30.6
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 1.7e-07 60.1 136 33.1
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 1.7e-07 60.1 62 46.8
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 4.8e-07 58.5 122 32.0
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 6.3e-07 58.2 73 41.1
Rhsim07G0046200 Rhododendron simsii HOM05D007511 ORTHO05D003753 8.2e-07 57.8 127 31.5
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 2.4e-06 56.2 148 29.1
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 7.0e-06 54.7 131 28.2
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 7.0e-06 54.7 156 30.8
Medtr8g010740 Medicago truncatula HOM05D007511 ORTHO05D003753 7.0e-06 54.7 88 45.5
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 7.0e-06 54.7 130 27.7


User provided reference genes

Program Settings