Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 3.0e-221 771.5 391 100.0
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 6.3e-195 684.1 392 92.3
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 1.2e-164 583.6 396 78.0
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 6.6e-152 541.2 388 75.5
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 3.6e-150 535.4 387 73.4
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 1.1e-149 533.9 397 72.0
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 2.9e-147 525.8 391 71.4
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 6.4e-147 524.6 396 73.0
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 1.1e-146 523.9 393 71.8
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 2.1e-145 519.6 397 71.0
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 8.6e-144 514.2 396 70.2
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 4.3e-143 511.9 393 71.0
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 1.1e-141 507.3 399 69.2
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 6.8e-141 504.6 368 72.6
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.2e-139 499.6 337 74.5
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 2.2e-139 499.6 399 68.4
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 8.4e-139 497.7 382 71.2
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 1.1e-138 497.3 393 70.7
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 3.2e-138 495.7 337 74.5
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 5.4e-138 495.0 391 70.6
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 7.1e-138 494.6 375 70.1
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 9.2e-138 494.2 337 74.2
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 1.2e-137 493.8 384 69.8
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 1.6e-137 493.4 411 67.4
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 2.1e-137 493.0 343 75.2
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.1e-137 493.0 336 73.8
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.1e-137 493.0 336 73.8
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 2.7e-137 492.7 343 75.8
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 4.6e-137 491.9 378 70.1
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 1.7e-136 490.0 344 75.3
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 1.7e-136 490.0 360 71.4
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 2.3e-136 489.6 369 69.9
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 3.9e-136 488.8 346 74.6
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 5.1e-136 488.4 377 69.5
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 8.6e-136 487.6 383 69.5
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 8.6e-136 487.6 298 83.6
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 1.1e-135 487.3 343 74.6
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 1.1e-135 487.3 395 67.6
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 1.1e-135 487.3 346 72.3
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 1.1e-135 487.3 342 73.4
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.5e-135 486.9 378 70.6
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 2.5e-135 486.1 365 70.4
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 2.5e-135 486.1 337 75.1
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 5.6e-135 485.0 343 73.5
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 5.6e-135 485.0 343 73.5
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 7.3e-135 484.6 346 72.3
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 9.6e-135 484.2 343 73.5
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 2.8e-134 482.6 363 71.3
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 2.8e-134 482.6 343 73.2
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 2.8e-134 482.6 343 73.2
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 3.6e-134 482.3 364 69.5
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 4.7e-134 481.9 378 70.1
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 1.1e-133 480.7 375 69.9
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 3.1e-133 479.2 348 74.4
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 4.0e-133 478.8 343 72.9
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 6.8e-133 478.0 394 67.3
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 6.8e-133 478.0 402 64.2
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 1.2e-132 477.2 345 71.6
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 3.4e-132 475.7 344 73.0
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 4.4e-132 475.3 312 77.9
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.7e-131 473.4 393 65.1
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 2.9e-131 472.6 342 72.5
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 6.4e-131 471.5 384 68.2
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 8.4e-131 471.1 364 69.8
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.4e-130 470.3 364 70.6
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 5.4e-130 468.4 314 78.0
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 7.1e-130 468.0 330 74.2
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 1.2e-129 467.2 349 70.2
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 6.0e-129 464.9 345 71.6
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 1.3e-128 463.8 399 65.4
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 3.0e-128 462.6 335 72.2
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 3.9e-128 462.2 388 65.2
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 3.9e-128 462.2 394 64.5
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 1.1e-127 460.7 333 73.9
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 1.5e-127 460.3 380 67.4
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 2.5e-127 459.5 345 71.0
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 2.8e-126 456.1 386 64.2
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 4.8e-126 455.3 375 66.7
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 8.1e-126 454.5 350 70.3
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 1.1e-125 454.1 345 70.1
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 5.3e-125 451.8 398 65.1
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 2.6e-124 449.5 347 70.6
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.3e-123 447.2 313 75.1
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 1.7e-123 446.8 351 68.7
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 1.9e-122 443.4 309 74.4
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 2.5e-119 433.0 342 66.1
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 1.8e-117 426.8 314 70.1
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 1.9e-114 416.8 312 72.1
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 2.7e-113 412.9 362 64.1
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 6.0e-113 411.8 375 61.3
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 1.1e-109 401.0 289 75.1
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 1.1e-109 401.0 298 69.8
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 7.1e-106 388.3 366 60.1
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 4.3e-103 379.0 278 71.9
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 7.6e-100 368.2 330 59.1
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 2.2e-91 340.1 238 73.1
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 5.7e-79 298.9 314 50.0
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 1.0e-75 288.1 318 47.8
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 1.3e-75 287.7 276 60.5
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.9e-75 286.6 203 71.9
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 3.6e-73 279.6 296 59.1
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 1.8e-72 277.3 317 46.4
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 3.3e-71 273.1 221 68.3
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 1.1e-69 268.1 282 58.5
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 3.6e-65 253.1 231 54.5
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 3.6e-65 253.1 380 44.2
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 1.2e-60 238.0 267 53.6
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 2.3e-56 223.8 174 70.1
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.1e-53 214.9 156 69.9
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 2.0e-47 194.1 143 70.6
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 1.1e-42 178.3 156 62.2
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 3.7e-38 163.3 124 69.4
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 6.0e-36 156.0 112 75.9
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 2.1e-33 147.5 338 32.5
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 4.7e-33 146.4 177 49.7
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 3.4e-23 113.6 82 72.0
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 5.2e-16 89.7 87 57.5
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 5.2e-16 89.7 294 27.6
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 7.6e-15 85.9 351 27.1
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 2.4e-13 80.9 46 87.0
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 2.3e-11 74.3 49 73.5
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 5.1e-11 73.2 48 72.9
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 5.6e-10 69.7 74 55.4
arahy.Tifrunner.gnm1.ann1.63F50L Arachis hypogaea HOM05D000300 ORTHO05D000383 4.0e-08 63.5 41 78.0


User provided reference genes

Program Settings