Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.0e-51 206.5 104 100.0
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 3.0e-43 178.3 103 87.4
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.9e-42 175.6 103 85.4
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 1.9e-42 175.6 100 87.0
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 1.7e-38 162.5 98 83.7
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 1.7e-38 162.5 98 83.7
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 1.7e-38 162.5 103 79.6
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 2.2e-38 162.2 103 78.6
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 2.9e-38 161.8 98 83.7
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 3.8e-38 161.4 103 79.6
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 1.1e-37 159.8 103 78.6
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 5.4e-37 157.5 103 76.7
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 5.4e-37 157.5 104 76.9
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 5.4e-37 157.5 102 75.5
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 7.1e-37 157.1 103 75.7
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 9.3e-37 156.8 103 76.7
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 75.7
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.6e-36 156.0 103 73.8
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 2.1e-36 155.6 98 76.5
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.7e-36 155.2 103 76.7
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 2.7e-36 155.2 103 74.8
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 4.6e-36 154.5 98 78.6
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 4.6e-36 154.5 102 72.5
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 6.0e-36 154.1 102 74.5
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 74.8
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 74.8
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 7.9e-36 153.7 98 76.5
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 7.9e-36 153.7 99 77.8
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 1.0e-35 153.3 102 71.6
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 1.0e-35 153.3 98 77.6
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 1.8e-35 152.5 103 71.8
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 1.8e-35 152.5 103 72.8
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 2.3e-35 152.1 98 76.5
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 3.0e-35 151.8 103 72.8
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 3.0e-35 151.8 98 76.5
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 3.0e-35 151.8 98 76.5
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 3.9e-35 151.4 102 71.6
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 3.9e-35 151.4 98 76.5
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 5.1e-35 151.0 103 73.8
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 6.7e-35 150.6 103 72.8
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 6.7e-35 150.6 97 75.3
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 6.7e-35 150.6 97 75.3
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 6.7e-35 150.6 103 72.8
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 6.7e-35 150.6 98 75.5
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 6.7e-35 150.6 98 75.5
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 8.7e-35 150.2 102 70.6
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 1.1e-34 149.8 102 71.6
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 1.1e-34 149.8 102 74.5
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 1.5e-34 149.4 103 69.9
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 1.5e-34 149.4 98 75.5
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.5e-34 149.4 99 75.8
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 1.9e-34 149.1 98 73.5
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.9e-34 149.1 103 72.8
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 4.3e-34 147.9 98 75.5
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 4.3e-34 147.9 103 70.9
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 5.6e-34 147.5 94 76.6
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 9.6e-34 146.7 103 73.8
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 1.3e-33 146.4 103 68.9
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 1.3e-33 146.4 103 68.9
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 1.3e-33 146.4 103 68.9
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 1.3e-33 146.4 103 68.9
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 1.3e-33 146.4 103 68.9
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 68.0
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 68.9
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 1.6e-33 146.0 102 68.6
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 1.6e-33 146.0 95 71.6
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.6e-33 146.0 102 69.6
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 70.9
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 1.6e-33 146.0 98 72.4
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 2.1e-33 145.6 100 71.0
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.1e-33 145.6 101 69.3
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 2.8e-33 145.2 103 68.9
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 2.8e-33 145.2 99 70.7
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 2.8e-33 145.2 103 68.9
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 2.8e-33 145.2 101 69.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.8e-33 145.2 101 69.3
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 2.8e-33 145.2 97 73.2
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 6.2e-33 144.1 103 67.0
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 6.2e-33 144.1 104 68.3
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 6.2e-33 144.1 103 67.0
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 6.2e-33 144.1 98 71.4
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 8.1e-33 143.7 103 70.9
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 8.1e-33 143.7 101 69.3
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.1e-32 143.3 98 73.5
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 1.4e-32 142.9 102 65.7
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 69.9
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 1.4e-32 142.9 101 67.3
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 1.4e-32 142.9 97 69.1
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 68.0
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.8e-32 142.5 99 72.7
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.8e-32 142.5 104 71.2
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.8e-32 142.5 94 75.5
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 2.4e-32 142.1 103 68.0
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 2.4e-32 142.1 103 68.0
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 2.4e-32 142.1 103 68.9
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 2.4e-32 142.1 103 68.9
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 3.1e-32 141.7 103 67.0
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 4.0e-32 141.4 97 71.1
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 4.0e-32 141.4 100 71.0
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 5.3e-32 141.0 103 68.0
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 5.3e-32 141.0 104 65.4
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 5.3e-32 141.0 95 69.5
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 6.9e-32 140.6 98 69.4
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.5e-31 139.4 98 69.4
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 2.0e-31 139.0 98 69.4
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 2.6e-31 138.7 103 66.0
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 2.6e-31 138.7 98 69.4
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 4.5e-31 137.9 98 71.4
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 5.8e-31 137.5 101 65.3
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 7.6e-31 137.1 104 65.4
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 2.9e-30 135.2 99 65.7
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 8.4e-30 133.7 99 66.7
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.9e-29 132.5 94 70.2
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.9e-29 132.5 94 70.2
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 5.5e-29 131.0 97 63.9
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 1.0e-27 126.7 98 64.3
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.3e-27 126.3 95 69.5
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 1.8e-27 125.9 103 62.1
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 1.8e-27 125.9 95 69.5
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 3.0e-27 125.2 70 82.9
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 6.7e-27 124.0 95 69.5
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 6.7e-27 124.0 95 69.5
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 8.7e-27 123.6 95 68.4
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 2.6e-23 112.1 73 68.5
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 4.5e-23 111.3 73 69.9
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 5.8e-23 110.9 73 68.5
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 7.6e-23 110.5 68 76.5
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.5e-21 105.5 103 59.2
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.5e-21 105.5 103 59.2
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.2e-20 103.2 90 58.9
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 1.6e-20 102.8 156 40.4
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 1.8e-19 99.4 62 79.0
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 2.3e-19 99.0 69 66.7
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 6.7e-19 97.4 72 61.1
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 3.7e-17 91.7 70 58.6
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 6.3e-17 90.9 71 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 6.9e-16 87.4 85 54.1
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 1.2e-15 86.7 103 49.5
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 2.0e-15 85.9 84 54.8
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.9e-13 79.3 104 48.1
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 5.5e-13 77.8 81 45.7
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 2.0e-10 69.3 81 44.4
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 2.0e-10 69.3 44 65.9
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 4.3e-10 68.2 74 52.7
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 3.4e-07 58.5 86 43.0
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 4.5e-07 58.2 61 42.6
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 3.8e-06 55.1 89 37.1


User provided reference genes

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