Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 2.7e-86 322.0 169 100.0
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 9.4e-71 270.4 169 87.0
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 5.0e-56 221.5 170 73.5
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 2.1e-54 216.1 170 74.1
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 1.5e-44 183.3 171 64.9
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 8.9e-29 131.0 172 48.8
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 9.2e-26 120.9 172 52.3
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 7.8e-25 117.9 171 46.8
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 2.8e-22 109.4 170 45.3
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 1.8e-21 106.7 170 48.2
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 8.3e-19 97.8 166 39.2
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 1.1e-18 97.4 171 43.3
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 6.6e-16 88.2 174 40.8
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 2.5e-15 86.3 165 43.0
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 3.3e-15 85.9 166 34.3
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 3.3e-15 85.9 130 44.6
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 7.3e-15 84.7 172 39.0
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 1.2e-14 84.0 171 40.9
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 1.2e-14 84.0 171 40.9
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 3.6e-14 82.4 134 43.3
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 8.1e-14 81.3 134 43.3
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.1e-13 80.9 134 43.3
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 1.4e-13 80.5 176 39.2
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.4e-13 80.5 203 40.9
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 2.3e-13 79.7 164 40.9
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 8.9e-13 77.8 169 37.9
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.5e-12 77.0 130 44.6
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.6e-12 76.3 169 39.1
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 7.5e-12 74.7 130 43.8
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 9.9e-12 74.3 168 39.3
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 9.9e-12 74.3 165 37.0
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 1.7e-11 73.6 167 39.5
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 2.2e-11 73.2 169 40.2
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 3.7e-11 72.4 162 36.4
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 6.4e-11 71.6 118 46.6
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 1.4e-10 70.5 163 36.2
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 4.1e-10 68.9 162 37.0
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 9.2e-10 67.8 162 40.1
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.6e-09 67.0 168 38.7
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.6e-09 67.0 168 34.5
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.6e-09 67.0 168 34.5
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.6e-09 67.0 137 40.1
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 2.1e-09 66.6 167 37.7
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 1.0e-08 64.3 144 37.5
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.0e-08 64.3 119 39.5
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.3e-08 63.2 99 39.4
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 5.1e-08 62.0 43 69.8
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 5.1e-08 62.0 163 34.4
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 6.6e-08 61.6 170 32.9
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.5e-07 60.5 120 35.8
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 1.9e-07 60.1 126 38.1
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.5e-07 59.7 133 36.8
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 3.3e-07 59.3 134 39.6
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 4.3e-07 58.9 94 41.5
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 4.3e-07 58.9 168 31.5
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 5.6e-07 58.5 169 34.3
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 7.3e-07 58.2 77 45.5
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 7.3e-07 58.2 77 45.5
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 7.3e-07 58.2 70 47.1
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 9.5e-07 57.8 133 36.8
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 1.2e-06 57.4 111 36.9
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.6e-06 57.0 43 65.1
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.6e-06 57.0 43 65.1
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 1.6e-06 57.0 43 65.1
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 2.1e-06 56.6 162 35.8
Dinv35543 Davidia involucrata HOM05D007866 ORTHO05D003871 4.7e-06 55.5 109 40.4
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 6.2e-06 55.1 77 44.2


User provided reference genes

Program Settings