Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 1.8e-78 295.8 144 100.0
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 1.7e-60 236.1 115 97.4
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 2.2e-60 235.7 116 96.6
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 6.3e-60 234.2 115 96.5
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 9.2e-59 230.3 115 94.8
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 3.5e-58 228.4 115 93.0
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 3.5e-58 228.4 115 93.0
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 5.9e-58 227.6 115 92.2
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 5.9e-58 227.6 115 93.0
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 5.9e-58 227.6 115 93.0
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 5.9e-58 227.6 115 93.0
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.0e-57 226.9 115 93.0
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 8.6e-57 223.8 115 93.0
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 4.0e-54 214.9 122 84.4
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 5.2e-54 214.5 115 87.8
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 9.8e-53 210.3 115 85.2
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 1.7e-52 209.5 115 85.2
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 2.9e-52 208.8 115 85.2
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 3.7e-52 208.4 115 84.3
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 1.1e-51 206.8 115 82.6
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.1e-51 206.8 115 85.2
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 1.4e-51 206.5 115 84.3
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.4e-51 206.5 115 83.5
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.4e-51 206.5 115 83.5
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 1.4e-51 206.5 115 83.5
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 1.8e-51 206.1 115 85.2
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 3.2e-51 205.3 115 81.7
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 4.1e-51 204.9 115 80.9
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 5.4e-51 204.5 115 83.5
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 5.4e-51 204.5 115 83.5
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 5.4e-51 204.5 115 81.7
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 5.4e-51 204.5 115 84.3
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 7.0e-51 204.1 115 82.6
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 1.2e-50 203.4 115 82.6
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 1.2e-50 203.4 115 82.6
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 1.2e-50 203.4 115 83.5
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 1.2e-50 203.4 115 80.9
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.6e-50 203.0 115 83.5
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.6e-50 203.0 115 82.6
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 1.6e-50 203.0 115 81.7
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.6e-50 203.0 115 80.9
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 2.0e-50 202.6 115 81.7
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 2.0e-50 202.6 115 81.7
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 2.0e-50 202.6 115 83.5
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 2.7e-50 202.2 115 81.7
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.7e-50 202.2 115 82.6
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 2.7e-50 202.2 141 68.8
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 3.5e-50 201.8 115 80.0
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 4.6e-50 201.4 115 80.9
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 6.0e-50 201.1 115 81.7
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 6.0e-50 201.1 115 80.9
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 1.0e-49 200.3 115 80.0
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 2.3e-49 199.1 115 78.3
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 3.9e-49 198.4 115 80.0
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.6e-49 197.6 112 83.9
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 8.6e-49 197.2 117 80.3
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 1.5e-48 196.4 118 79.7
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 2.5e-48 195.7 115 82.6
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 3.3e-48 195.3 115 78.3
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 7.3e-48 194.1 115 80.0
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 2.1e-47 192.6 115 79.1
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 4.7e-47 191.4 115 77.4
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.1e-46 188.7 136 69.1
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.1e-46 188.7 136 69.1
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 4.0e-46 188.3 108 80.6
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 2.6e-45 185.7 110 77.3
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.7e-44 183.0 115 78.3
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 2.9e-44 182.2 115 73.9
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 3.7e-44 181.8 115 74.8
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 6.4e-44 181.0 115 74.8
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 8.3e-44 180.6 115 73.9
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 1.3e-41 173.3 160 57.5
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 3.1e-38 162.2 85 88.2
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 7.5e-37 157.5 87 83.9
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 9.9e-37 157.1 87 85.1
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 6.4e-36 154.5 87 81.6
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 1.4e-35 153.3 113 66.4
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.4e-35 152.5 87 85.1
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 2.4e-35 152.5 87 82.8
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 2.1e-34 149.4 116 62.9
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 4.6e-34 148.3 116 59.5
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.3e-32 142.1 162 47.5
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 3.3e-32 142.1 116 65.5
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.2e-29 133.7 117 60.7
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 1.2e-29 133.7 117 60.7
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.5e-29 133.3 81 81.5
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 6.4e-28 127.9 127 48.8
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 7.1e-19 97.8 88 60.2
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 1.9e-16 89.7 118 44.9
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 1.6e-10 70.1 91 42.9
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 2.3e-09 66.2 77 37.7


User provided reference genes

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