Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 4.5e-126 454.5 217 100.0
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 3.8e-125 451.4 217 99.1
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 2.1e-115 419.1 212 95.3
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 4.7e-115 417.9 218 91.7
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 8.0e-115 417.2 217 90.3
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 2.3e-114 415.6 217 89.9
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 8.8e-114 413.7 217 92.2
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 5.7e-113 411.0 218 90.4
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.3e-112 409.8 217 89.9
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 3.7e-112 408.3 217 88.9
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 2.4e-111 405.6 218 89.0
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 2.0e-110 402.5 217 87.6
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 7.7e-110 400.6 217 87.1
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 1.0e-109 400.2 216 87.0
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 1.0e-109 400.2 216 87.0
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 2.2e-109 399.1 218 87.2
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 2.9e-109 398.7 217 87.1
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 3.8e-109 398.3 217 86.6
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 6.5e-109 397.5 217 85.7
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 6.5e-109 397.5 217 86.2
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 8.5e-109 397.1 217 86.2
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.9e-108 396.0 217 87.1
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 2.5e-108 395.6 217 85.7
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 2.5e-108 395.6 217 87.1
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 2.5e-108 395.6 218 87.2
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 3.2e-108 395.2 217 85.7
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 4.2e-108 394.8 217 86.2
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 4.2e-108 394.8 217 84.8
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 4.2e-108 394.8 221 85.5
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 4.2e-108 394.8 217 86.6
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 4.2e-108 394.8 217 85.7
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 5.5e-108 394.4 217 85.7
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 7.2e-108 394.0 216 85.2
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.2e-107 393.3 217 84.8
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 3.6e-107 391.7 217 85.7
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.8e-106 389.4 217 85.3
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.8e-106 389.4 217 84.8
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 4.0e-106 388.3 217 84.3
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.8e-106 387.5 218 84.9
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 6.8e-106 387.5 215 83.7
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 1.2e-105 386.7 217 84.3
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 3.4e-105 385.2 217 83.9
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 5.7e-105 384.4 221 83.3
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 7.5e-105 384.0 217 83.4
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 7.5e-105 384.0 217 83.9
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 7.5e-105 384.0 217 83.9
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 9.8e-105 383.6 218 82.1
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 1.7e-104 382.9 217 82.9
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 2.8e-104 382.1 239 77.4
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 2.8e-104 382.1 217 83.4
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 3.7e-104 381.7 200 88.5
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 6.3e-104 380.9 217 82.9
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.4e-103 379.8 217 82.5
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 1.4e-103 379.8 190 95.3
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 1.8e-103 379.4 217 82.5
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 3.1e-103 378.6 218 82.6
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 3.1e-103 378.6 217 82.5
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 7.0e-103 377.5 217 81.6
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 7.0e-103 377.5 218 82.6
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 7.0e-103 377.5 233 78.1
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 9.1e-103 377.1 218 82.1
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 9.1e-103 377.1 218 81.7
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.6e-102 376.3 200 86.0
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 2.7e-102 375.6 217 81.6
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 3.5e-102 375.2 218 82.1
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 4.5e-102 374.8 218 81.7
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 4.5e-102 374.8 218 81.7
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 4.5e-102 374.8 217 81.6
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 4.5e-102 374.8 218 82.1
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 7.7e-102 374.0 220 80.0
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 7.7e-102 374.0 217 82.0
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.0e-101 373.6 217 82.0
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.3e-101 373.2 217 82.9
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 2.2e-101 372.5 218 81.7
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 2.2e-101 372.5 217 81.6
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 2.9e-101 372.1 226 79.6
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.1e-100 370.2 217 81.1
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 7.2e-100 367.5 220 79.1
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 9.4e-100 367.1 218 80.3
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 9.4e-100 367.1 182 91.8
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 4.7e-99 364.8 222 79.3
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.4e-98 363.2 200 84.5
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 6.8e-98 360.9 219 79.9
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 8.8e-98 360.5 243 74.1
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 2.0e-97 359.4 186 89.2
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 4.4e-97 358.2 177 91.5
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 2.2e-96 355.9 216 78.7
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.8e-96 355.5 190 87.9
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 8.3e-96 354.0 190 86.8
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.8e-95 352.8 188 84.6
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 2.4e-95 352.4 213 78.9
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 4.1e-95 351.7 191 85.9
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 4.1e-95 351.7 190 86.8
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 7.0e-95 350.9 191 85.9
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 9.2e-95 350.5 205 81.0
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.0e-93 347.1 200 81.5
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 2.3e-93 345.9 199 81.9
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 2.1e-91 339.3 193 82.9
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 2.8e-91 339.0 191 85.3
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 4.7e-91 338.2 209 76.6
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.0e-85 320.5 196 71.4
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 8.6e-85 317.4 196 70.9
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 6.8e-82 307.8 208 66.8
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 8.9e-82 307.4 196 69.4
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.5e-76 290.0 145 89.7
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 7.3e-76 287.7 145 90.3
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.1e-75 286.2 172 79.1
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.1e-75 286.2 172 79.1
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 3.4e-73 278.9 199 63.3
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 7.1e-71 271.2 133 91.0
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 3.1e-66 255.8 133 87.2
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 3.1e-66 255.8 133 86.5
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.5e-62 242.3 130 82.3
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 4.3e-60 235.3 122 85.2
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-56 223.8 158 69.6
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.5e-54 215.7 127 81.1
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.3e-44 182.2 108 81.5
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 9.9e-41 171.0 89 88.8
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.1e-39 167.5 93 83.9
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 1.2e-30 137.5 88 79.5
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 2.7e-30 136.3 84 81.0
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 1.1e-26 124.4 208 35.6
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.0e-24 117.9 207 37.2
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 2.1e-14 83.6 39 94.9
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 3.6e-14 82.8 42 83.3
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 1.5e-12 77.4 64 60.9
Glyma.01G100600 Glycine max HOM05D001794 ORTHO05D015431 1.4e-10 70.9 36 100.0
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 8.5e-08 61.6 39 64.1


User provided reference genes

Program Settings