Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 2.9e-207 724.9 355 100.0
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 5.9e-184 647.5 355 89.6
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 4.0e-180 634.8 355 87.3
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 2.0e-176 622.5 355 85.4
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 1.5e-166 589.7 339 85.0
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 5.6e-166 587.8 353 80.5
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 4.3e-150 535.0 352 73.3
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.6e-149 533.1 352 73.0
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 2.1e-149 532.7 355 74.4
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 9.0e-140 500.7 345 70.7
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 6.4e-138 494.6 330 71.8
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 1.1e-137 493.8 345 69.9
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 2.1e-136 489.6 353 65.7
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 3.5e-136 488.8 337 70.6
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 8.7e-135 484.2 325 71.1
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.1e-134 483.8 355 65.4
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.5e-134 483.4 355 65.9
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 5.6e-134 481.5 353 66.6
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 5.3e-132 474.9 355 64.5
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 7.6e-131 471.1 353 64.3
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 1.7e-130 469.9 353 63.2
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 1.7e-130 469.9 355 63.9
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 2.2e-130 469.5 354 64.1
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 2.9e-130 469.2 354 63.8
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 4.9e-130 468.4 350 65.7
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 1.1e-129 467.2 353 62.0
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 2.4e-129 466.1 348 64.7
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 5.4e-129 464.9 348 64.7
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 1.6e-128 463.4 348 63.5
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.8e-127 459.9 356 61.5
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 2.3e-127 459.5 348 64.4
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 2.3e-127 459.5 356 61.5
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.9e-127 458.8 356 61.2
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 6.7e-127 458.0 356 62.1
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 1.1e-126 457.2 350 63.7
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.8e-125 452.6 328 64.3
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 4.0e-124 448.7 334 62.9
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 6.9e-124 448.0 355 61.4
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 1.4e-121 440.3 351 60.4
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 1.9e-121 439.9 348 61.5
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 9.3e-121 437.6 354 60.5
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.2e-120 437.2 246 86.6
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 7.9e-120 434.5 354 61.6
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 5.1e-119 431.8 345 60.0
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 6.7e-119 431.4 344 60.2
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.6e-117 426.8 334 62.6
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 3.7e-117 425.6 351 58.7
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 6.2e-117 424.9 297 69.4
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 2.4e-116 422.9 348 58.9
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 2.4e-116 422.9 338 60.1
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 6.9e-116 421.4 353 57.5
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 1.2e-115 420.6 348 58.9
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 2.6e-115 419.5 338 60.1
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 2.6e-115 419.5 327 63.6
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 7.6e-115 417.9 334 59.0
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 4.2e-113 412.1 348 57.2
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 2.1e-112 409.8 343 58.0
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 2.1e-112 409.8 348 57.2
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 3.5e-112 409.1 348 59.2
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 6.1e-112 408.3 348 57.5
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.3e-111 407.1 286 67.1
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 2.3e-111 406.4 348 57.5
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 3.0e-111 406.0 352 57.1
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 3.0e-111 406.0 355 55.5
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 3.0e-111 406.0 334 58.4
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 6.7e-111 404.8 314 62.1
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 8.7e-111 404.4 348 57.5
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 4.3e-110 402.1 348 57.2
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 1.4e-108 397.1 318 60.7
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 1.4e-108 397.1 335 56.4
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 1.8e-108 396.7 313 60.4
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 1.2e-107 394.0 348 55.2
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 1.2e-107 394.0 326 57.7
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 1.5e-107 393.7 340 57.1
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 5.9e-107 391.7 354 56.8
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 1.9e-105 386.7 353 56.1
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 2.5e-105 386.3 349 57.0
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 3.6e-104 382.5 355 54.9
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 4.6e-104 382.1 353 54.1
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 6.1e-104 381.7 393 53.2
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.0e-103 380.9 328 57.0
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 8.2e-101 371.3 341 53.4
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 1.5e-99 367.1 353 54.1
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 1.0e-98 364.4 355 51.3
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 2.9e-98 362.8 246 71.1
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 1.4e-97 360.5 348 52.0
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 2.5e-97 359.8 355 49.9
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 1.5e-94 350.5 341 52.8
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 1.4e-92 344.0 348 50.6
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 1.0e-90 337.8 209 77.5
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.0e-90 337.8 339 51.0
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 1.3e-90 337.4 230 70.9
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 2.2e-90 336.7 331 51.7
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 2.1e-88 330.1 218 71.6
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 5.7e-86 322.0 303 53.8
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 6.3e-85 318.5 346 50.6
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 9.1e-84 314.7 208 70.2
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 1.1e-76 291.2 291 51.5
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 1.4e-76 290.8 248 58.5
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 5.9e-75 285.4 298 48.7
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 5.5e-73 278.9 342 46.8
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 9.1e-68 261.5 204 62.3
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 6.1e-56 222.2 282 43.3
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 2.8e-48 196.8 150 60.7
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 5.1e-42 176.0 344 32.6
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.9e-41 174.1 199 47.2
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 9.2e-36 155.2 224 39.3
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 3.5e-35 153.3 167 47.3
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 8.1e-32 142.1 204 38.7
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 5.8e-22 109.4 141 41.8
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.7e-19 100.5 246 30.5
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.0e-14 84.3 174 31.6
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.7e-13 81.3 196 32.1
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.1e-12 78.6 179 33.5
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 2.4e-12 77.4 187 32.6
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 2.4e-12 77.4 185 32.4
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 2.1e-11 74.3 198 29.8
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 2.1e-11 74.3 197 28.9
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 4.6e-11 73.2 186 31.7
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 4.6e-11 73.2 201 28.4
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 7.9e-11 72.4 192 30.7
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 7.9e-11 72.4 192 30.7
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 7.9e-11 72.4 184 31.5
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 1.0e-10 72.0 185 28.1
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 3.0e-10 70.5 171 31.6
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 3.9e-10 70.1 197 31.5
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 1.1e-09 68.6 147 32.7
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 1.5e-09 68.2 182 31.9
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 1.5e-09 68.2 47 59.6
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 1.9e-09 67.8 192 28.6
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 2.5e-09 67.4 199 31.2
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 3.3e-09 67.0 182 31.3
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 4.3e-09 66.6 301 23.6
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 4.3e-09 66.6 185 27.6
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 2.8e-08 63.9 142 28.2
FAN25G0122 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.7e-08 63.5 236 23.3
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.7e-08 63.5 236 23.3
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 4.8e-08 63.2 153 31.4
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 8.1e-08 62.4 219 26.9
Rhsim09G0004700 Rhododendron simsii HOM05D000001 ORTHO05D000003 8.1e-08 62.4 237 24.5
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.1e-07 62.0 156 30.1
Rhsim12G0110900 Rhododendron simsii HOM05D000001 ORTHO05D010426 1.4e-07 61.6 350 23.4
FAN16G1783 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.4e-07 60.8 236 23.3
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 2.4e-07 60.8 158 31.6
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 4.0e-07 60.1 156 29.5
MSTRG.19663 Avicennia marina HOM05D006258 ORTHO05D007961 5.3e-07 59.7 325 22.5
FvH4_3g28010 Fragaria vesca HOM05D000001 ORTHO05D000003 6.9e-07 59.3 236 23.3
FAN11G1860 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.9e-07 59.3 236 23.3
Rhsim10G0182600 Rhododendron simsii HOM05D000001 ORTHO05D010426 1.2e-06 58.5 270 21.9
FAN21G2622 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-06 58.2 236 22.9
Lju124C31T1 Lonicera japonica HOM05D000001 ORTHO05D000003 1.5e-06 58.2 247 22.7
Rhsim03G0001000 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.5e-06 58.2 247 23.1
PGR083G2638 Punica granatum HOM05D008684 ORTHO05D010796 2.6e-06 57.4 238 21.0
Rhsim09G0007400 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.6e-06 57.4 237 23.2
arahy.Tifrunner.gnm1.ann1.MTM7TL Arachis hypogaea HOM05D006258 ORTHO05D007961 7.6e-06 55.8 280 20.7
arahy.Tifrunner.gnm1.ann1.FEEJ53 Arachis hypogaea HOM05D006258 ORTHO05D007961 1.0e-05 55.5 280 19.6


User provided reference genes

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