Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 8.4e-70 266.9 137 100.0
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 4.7e-36 154.8 94 85.1
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.0e-35 153.7 94 84.0
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 5.1e-35 151.4 94 80.9
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 6.7e-35 151.0 82 91.5
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 2.0e-34 149.4 87 87.4
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 7.4e-34 147.5 94 80.9
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 3.7e-33 145.2 94 79.8
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 8.2e-33 144.1 94 77.7
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.8e-32 142.9 98 73.5
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 2.4e-32 142.5 84 81.0
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 2.4e-32 142.5 84 83.3
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 7.0e-32 141.0 84 82.1
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.2e-31 140.2 90 75.6
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.5e-31 139.8 84 81.0
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 2.6e-31 139.0 84 81.0
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 5.9e-31 137.9 84 81.0
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 7.7e-31 137.5 84 79.8
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.0e-30 137.1 84 77.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.0e-30 137.1 84 81.0
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.0e-30 137.1 84 77.4
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.0e-30 137.1 84 79.8
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.0e-30 137.1 84 79.8
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.3e-30 136.7 86 77.9
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.3e-30 136.7 84 78.6
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.3e-30 136.7 84 78.6
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.7e-30 136.3 84 78.6
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 1.7e-30 136.3 84 78.6
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 2.9e-30 135.6 90 74.4
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 2.9e-30 135.6 84 75.0
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 3.8e-30 135.2 84 78.6
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 5.0e-30 134.8 84 79.8
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 8.5e-30 134.0 93 71.0
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.1e-29 133.7 92 71.7
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.1e-29 133.7 84 77.4
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.4e-29 133.3 84 78.6
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 1.4e-29 133.3 84 78.6
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 1.9e-29 132.9 84 77.4
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.9e-29 132.9 84 77.4
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.9e-29 132.9 84 76.2
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 2.5e-29 132.5 93 71.0
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 3.2e-29 132.1 94 71.3
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 3.2e-29 132.1 84 77.4
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 4.2e-29 131.7 84 76.2
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 4.2e-29 131.7 84 77.4
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 4.2e-29 131.7 84 77.4
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 4.2e-29 131.7 93 71.0
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 4.2e-29 131.7 84 76.2
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 5.5e-29 131.3 84 75.0
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 5.5e-29 131.3 84 76.2
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 5.5e-29 131.3 84 72.6
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 7.2e-29 131.0 100 66.0
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 7.2e-29 131.0 100 66.0
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 9.4e-29 130.6 93 69.9
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 9.4e-29 130.6 84 75.0
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.6e-28 129.8 94 69.1
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.6e-28 129.8 94 69.1
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 1.6e-28 129.8 94 70.2
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 2.1e-28 129.4 90 74.4
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 2.7e-28 129.0 85 75.3
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 3.6e-28 128.6 84 73.8
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 3.6e-28 128.6 84 76.2
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 4.7e-28 128.3 84 71.4
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 6.1e-28 127.9 93 69.9
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.4e-27 126.7 84 71.4
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 1.4e-27 126.7 84 71.4
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.4e-27 126.7 84 72.6
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 2.3e-27 125.9 94 64.9
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 3.9e-27 125.2 84 71.4
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 5.2e-27 124.8 84 70.2
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 8.8e-27 124.0 84 71.4
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 8.8e-27 124.0 84 71.4
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 8.8e-27 124.0 84 70.2
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 2.0e-26 122.9 84 70.2
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 4.4e-26 121.7 94 64.9
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.7e-26 121.3 84 69.0
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.7e-26 121.3 84 69.0
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 5.7e-26 121.3 94 68.1
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 5.7e-26 121.3 84 70.2
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 9.7e-26 120.6 84 69.0
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 9.7e-26 120.6 84 69.0
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 9.7e-26 120.6 84 69.0
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 2.8e-25 119.0 84 66.7
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.8e-25 119.0 84 67.9
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 3.7e-25 118.6 84 67.9
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.7e-25 118.6 100 64.0
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 3.7e-25 118.6 84 66.7
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.1e-24 117.1 84 67.9
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-24 117.1 100 63.0
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.8e-24 116.3 85 65.9
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 2.4e-24 115.9 94 60.6
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.2e-23 113.6 84 64.3
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 1.2e-23 113.6 84 64.3
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-23 113.2 91 68.1
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 2.6e-23 112.5 97 58.8
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 3.5e-23 112.1 84 64.3
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.0e-22 110.5 90 67.8
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.0e-22 110.5 90 67.8
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.0e-22 110.5 84 61.9
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.7e-22 109.8 91 67.0
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.7e-22 109.8 92 62.0
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.2e-22 109.4 80 66.2
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.8e-22 108.6 91 67.0
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 5.0e-22 108.2 84 61.9
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 6.5e-22 107.8 93 61.3
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.1e-21 107.1 83 67.5
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 1.1e-21 107.1 93 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 1.5e-21 106.7 103 51.5
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.5e-21 105.9 90 65.6
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 8.0e-20 100.9 84 58.3
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 6.5e-14 81.3 89 44.9
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.1e-13 80.5 84 53.6
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.2e-13 79.0 65 53.8
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 2.7e-12 75.9 83 50.6
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.0e-11 73.9 50 66.0
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 2.2e-09 66.2 68 52.9
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.8e-08 63.2 39 74.4
arahy.Tifrunner.gnm1.ann1.LXE9FZ Arachis hypogaea HOM05D005802 ORTHO05D006992 2.0e-07 59.7 37 78.4
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 7.7e-07 57.8 90 45.6
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.7e-06 56.6 34 76.5
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 5.0e-06 55.1 89 37.1


User provided reference genes

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