Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 0.0e+00 1273.5 632 100.0
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 0.0e+00 1140.2 637 90.3
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.3e-310 1067.8 631 86.8
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.1e-308 1062.8 631 86.8
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.8e-260 902.5 658 72.8
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 2.9e-258 895.2 575 78.3
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 3.6e-256 888.3 657 72.1
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 1.0e-255 886.7 656 72.3
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 5.7e-254 880.9 643 73.1
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.3e-253 879.8 659 71.3
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.5e-251 872.8 647 72.0
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 5.0e-250 867.8 652 71.2
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.1e-246 856.7 650 70.3
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 1.3e-245 853.2 549 78.5
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.0e-242 843.6 640 69.7
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 5.5e-241 837.8 570 73.2
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 5.5e-241 837.8 641 68.2
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 2.6e-238 828.9 641 67.1
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.3e-238 828.6 644 66.9
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 5.7e-238 827.8 644 66.9
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 6.3e-237 824.3 661 67.3
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 6.3e-237 824.3 643 67.5
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.1e-236 823.5 574 72.1
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 7.0e-236 820.8 664 65.8
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.6e-235 818.9 609 69.3
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 5.9e-235 817.8 572 71.5
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 7.7e-235 817.4 671 65.9
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.7e-234 816.2 577 72.4
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 2.9e-234 815.5 574 72.3
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.8e-234 815.1 609 69.3
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 3.8e-234 815.1 656 66.3
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.5e-233 813.1 609 69.1
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.5e-233 812.4 659 66.6
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.5e-233 812.4 659 66.6
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 4.2e-233 811.6 659 66.6
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-232 810.1 662 66.2
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-232 810.1 659 66.5
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.1e-232 809.3 616 69.6
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 4.7e-232 808.1 572 71.3
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.3e-231 805.8 623 67.1
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.2e-231 804.7 636 67.9
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 1.5e-230 803.1 605 68.8
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 5.7e-230 801.2 612 68.3
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 1.3e-229 800.0 638 67.9
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 4.8e-229 798.1 667 64.9
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 4.8e-229 798.1 640 64.5
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 8.2e-229 797.3 636 64.6
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 2.0e-227 792.7 575 70.1
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.0e-227 792.7 642 65.4
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.1e-225 786.9 640 65.9
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 1.5e-225 786.6 621 65.7
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 3.2e-225 785.4 590 68.0
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 4.7e-224 781.6 591 68.4
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 8.0e-224 780.8 550 71.8
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.8e-223 779.6 621 64.7
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.3e-223 779.2 621 64.7
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.3e-223 779.2 626 65.7
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 8.8e-223 777.3 571 68.5
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 2.0e-222 776.2 668 62.6
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 9.8e-222 773.9 574 68.6
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.3e-221 773.5 577 68.8
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.7e-221 773.1 574 68.6
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 3.1e-220 768.8 571 67.8
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.2e-219 766.9 573 68.1
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.6e-219 766.5 556 71.2
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 5.9e-219 764.6 584 66.6
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 5.9e-219 764.6 584 66.6
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 8.5e-218 760.8 618 65.4
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.9e-217 759.6 578 66.8
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.4e-215 753.4 575 68.2
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 2.3e-215 752.7 616 65.1
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 8.8e-215 750.7 664 62.8
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 2.6e-214 749.2 644 63.5
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 5.7e-214 748.0 572 66.6
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 9.8e-214 747.3 574 66.6
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.7e-213 746.5 607 64.1
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 2.2e-213 746.1 647 63.7
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 2.4e-212 742.7 572 66.4
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 3.1e-212 742.3 646 63.0
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 3.1e-212 742.3 646 63.0
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 4.1e-212 741.9 646 63.0
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 1.3e-210 736.9 601 66.7
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 2.1e-208 729.6 655 60.3
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 2.3e-207 726.1 586 64.0
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 3.0e-207 725.7 569 64.7
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 6.8e-207 724.5 579 65.1
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 2.6e-206 722.6 569 64.5
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 2.6e-206 722.6 569 64.7
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 3.4e-206 722.2 569 64.7
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 4.4e-206 721.8 634 60.1
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 8.3e-205 717.6 626 61.3
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 9.2e-204 714.1 651 59.6
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.9e-202 708.8 574 64.1
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 6.6e-202 708.0 586 63.0
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.5e-201 706.8 659 61.2
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.5e-201 706.8 659 61.2
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.5e-201 706.8 659 61.2
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 9.5e-201 704.1 577 63.3
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 3.6e-200 702.2 648 58.5
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.1e-199 700.7 619 59.6
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 4.0e-199 698.7 623 60.4
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 5.8e-198 694.9 595 61.2
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 8.3e-197 691.0 665 60.0
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 4.1e-196 688.7 566 62.5
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.0e-195 686.4 514 68.5
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.5e-195 685.6 543 65.0
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 3.5e-195 685.6 580 61.0
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.1e-193 680.6 609 60.8
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 3.1e-191 672.5 662 59.1
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 8.9e-191 671.0 644 56.4
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 8.9e-191 671.0 519 67.4
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 3.9e-186 655.6 567 63.3
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 2.4e-183 646.4 551 62.8
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 3.1e-183 646.0 572 60.8
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 3.6e-176 622.5 594 57.4
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 2.2e-173 613.2 587 57.4
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 6.4e-173 611.7 628 54.6
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 3.0e-170 602.8 624 56.1
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 1.3e-168 597.4 615 53.7
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 6.0e-163 578.6 661 53.4
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.3e-162 577.4 651 50.8
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 2.1e-155 553.5 449 63.3
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 2.6e-150 536.6 577 50.6
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 4.3e-145 519.2 477 57.9
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 8.2e-144 515.0 562 52.8
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.2e-142 511.1 423 64.1
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 3.7e-136 489.6 609 47.0
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 2.9e-133 479.9 379 65.2
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 1.9e-132 477.2 351 68.7
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.8e-114 417.5 420 52.1
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 4.8e-112 409.5 399 53.4
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 5.5e-100 369.4 301 65.1
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 3.7e-88 330.1 363 52.6
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 2.5e-68 264.2 570 32.8
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.4e-63 248.4 184 67.4
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 2.3e-61 241.1 401 40.4
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 9.6e-52 209.1 224 51.3
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.0e-45 189.1 168 57.7
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 7.4e-36 156.4 152 54.6
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.6e-27 128.6 312 30.4
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 2.2e-27 128.3 76 78.9
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 6.3e-27 126.7 97 67.0
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 3.7e-19 100.9 105 52.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 3.8e-16 90.9 159 41.5
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.0e-08 66.2 58 62.1
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 2.2e-08 65.1 126 41.3
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 1.6e-06 58.9 42 71.4


User provided reference genes

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