Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 3.8e-210 734.6 367 100.0
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 3.7e-189 664.8 350 95.1
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 1.3e-186 656.4 367 89.4
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.4e-172 609.8 344 89.8
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.9e-169 599.4 368 80.7
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 7.3e-169 597.4 368 80.7
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 8.3e-165 583.9 368 79.9
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 3.5e-163 578.6 368 78.5
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 4.0e-159 565.1 369 78.3
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 5.2e-159 564.7 367 78.5
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 5.8e-158 561.2 368 75.8
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 3.0e-154 548.9 368 75.3
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 8.6e-154 547.4 368 75.5
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.1e-151 540.4 368 72.8
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.2e-150 537.0 370 71.4
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 3.4e-150 535.4 370 71.6
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 2.1e-147 526.2 370 71.6
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 2.1e-147 526.2 368 70.7
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 3.5e-147 525.4 370 71.9
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 3.5e-147 525.4 349 76.8
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 3.5e-147 525.4 370 71.4
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.5e-145 519.2 372 70.4
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 7.3e-145 517.7 370 70.3
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 4.7e-144 515.0 370 70.5
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 8.1e-144 514.2 370 70.3
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 3.1e-143 512.3 370 71.4
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 4.0e-143 511.9 371 69.8
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.3e-141 506.9 370 68.6
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 2.9e-141 505.8 371 69.3
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 4.9e-141 505.0 373 68.9
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 4.9e-141 505.0 368 68.8
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 8.4e-141 504.2 371 69.0
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 1.4e-140 503.4 370 69.7
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 3.2e-140 502.3 371 67.7
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.2e-140 502.3 371 69.0
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.2e-139 500.4 370 67.8
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 2.1e-139 499.6 376 68.6
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 6.0e-139 498.0 370 67.3
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.3e-138 496.1 370 67.3
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.7e-138 494.2 370 67.3
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.2e-134 483.8 376 66.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 5.8e-134 481.5 370 64.6
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 1.3e-133 480.3 371 67.4
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 6.4e-133 478.0 370 64.6
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.4e-132 476.1 367 65.9
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.4e-132 476.1 367 65.9
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 7.1e-132 474.6 375 64.5
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.6e-131 473.4 368 65.2
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 5.6e-129 464.9 370 62.4
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.1e-128 463.0 367 65.4
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 3.8e-125 452.2 372 61.6
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 3.2e-124 449.1 371 62.0
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.2e-123 447.2 372 62.1
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.1e-123 446.4 369 62.3
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.3e-122 443.0 371 59.8
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 3.0e-122 442.6 349 65.9
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 5.1e-122 441.8 369 59.6
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.1e-121 440.7 370 59.2
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.1e-121 440.7 369 59.1
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 2.5e-121 439.5 363 62.5
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 2.5e-121 439.5 368 60.6
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 3.3e-121 439.1 370 61.6
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 3.3e-121 439.1 349 65.6
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 2.1e-120 436.4 369 59.6
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 2.1e-120 436.4 412 54.9
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 3.7e-120 435.6 367 63.8
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 4.8e-120 435.3 377 60.2
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 4.5e-118 428.7 374 57.8
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 2.2e-117 426.4 375 57.9
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 2.9e-117 426.0 370 60.8
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.8e-117 425.6 374 58.8
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 4.9e-117 425.2 378 56.1
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.1e-116 424.1 355 62.0
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 4.2e-116 422.2 374 57.2
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.7e-115 419.5 373 61.7
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 2.7e-115 419.5 329 65.0
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 2.7e-115 419.5 371 60.6
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 3.5e-115 419.1 372 58.9
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 1.3e-114 417.2 376 56.6
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.8e-114 416.8 368 58.2
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.8e-114 416.8 385 57.9
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.3e-114 416.4 373 56.8
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 2.3e-114 416.4 376 56.6
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 3.9e-114 415.6 380 55.8
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 3.9e-114 415.6 372 58.9
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 5.1e-114 415.2 373 58.2
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 6.7e-114 414.8 301 70.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.5e-113 413.7 380 55.8
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 1.5e-113 413.7 345 63.2
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 2.5e-113 412.9 346 60.4
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 7.4e-113 411.4 372 56.7
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 2.1e-112 409.8 403 55.6
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 4.8e-112 408.7 383 55.9
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.8e-111 406.8 363 57.3
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 5.3e-111 405.2 385 54.5
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 5.3e-111 405.2 367 59.1
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 6.9e-111 404.8 384 54.7
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 4.5e-110 402.1 384 54.4
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 7.6e-110 401.4 379 54.1
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.0e-109 401.0 354 61.0
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 4.2e-108 395.6 326 62.6
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 9.3e-108 394.4 370 53.0
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 4.6e-107 392.1 321 62.0
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 6.1e-107 391.7 370 52.2
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 1.1e-105 387.5 335 60.9
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.5e-105 387.1 354 59.3
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 6.3e-104 381.7 359 54.6
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 8.2e-104 381.3 367 52.9
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 2.4e-103 379.8 369 52.0
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 2.6e-102 376.3 349 56.2
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 4.5e-102 375.6 375 52.8
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 7.7e-102 374.8 369 54.7
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 9.4e-100 367.9 302 61.9
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 6.1e-99 365.2 368 54.3
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.0e-98 362.8 391 49.1
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.5e-97 360.5 322 56.8
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 2.6e-97 359.8 345 53.3
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 2.8e-96 356.3 380 51.1
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 1.5e-94 350.5 332 56.9
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.3e-85 320.9 380 47.1
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 7.2e-84 315.1 372 48.1
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 3.1e-79 299.7 298 54.7
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 2.0e-78 297.0 477 39.6
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 2.7e-78 296.6 299 54.2
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.1e-76 291.2 342 47.4
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 9.4e-76 288.1 215 67.0
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.0e-74 282.7 241 60.6
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 2.8e-72 276.6 382 40.8
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 6.3e-72 275.4 406 39.9
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 5.5e-68 262.3 273 53.8
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 6.1e-67 258.8 259 54.8
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.0e-65 253.8 287 50.9
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.1e-63 248.1 385 37.4
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 5.0e-61 239.2 233 54.5
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.9e-60 237.3 260 48.8
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.8e-59 233.4 241 54.4
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.0e-58 229.6 255 52.2
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.3e-56 224.6 336 40.5
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.2e-56 223.8 209 52.6
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 6.8e-50 202.2 213 54.0
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.1e-47 194.9 152 65.8
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.2e-47 193.4 115 77.4
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 9.2e-47 191.8 137 65.0
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.0e-46 190.7 386 32.6
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 4.4e-33 146.4 75 97.3
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.4e-26 124.8 149 49.7
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.3e-24 118.2 266 30.5
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 4.2e-23 113.2 435 24.1
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 2.1e-19 100.9 73 71.2
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.7e-16 91.3 120 42.5
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.0e-13 82.0 42 90.5
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 4.8e-11 73.2 49 73.5
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 3.5e-06 57.0 42 71.4
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 7.9e-06 55.8 95 38.9


User provided reference genes

Program Settings